Table 1. List of Bartonella species and outgroup selected for SNP and orthologous gene analysis.
| Genome | Accession number | Source | Cluster (SNP)a) | Cluster (Orthologous gene)b) |
|---|---|---|---|---|
| B. quintana RM-11 | NC_018533 | Monkey (Rhesus macaques) | 1 | I |
| B. henselae MVT02 | NZ_LN879429 | Human (Homo sapiens) | 1 | I |
| B. henselae str. Houston-1 | NC_005956 | Human (Homo sapiens) | 1 | I |
| B. koehlerae C-29 | NZ_AHPL00000000 | Cat (Felis domesticus) | 1 | I |
| B. senegalensis OS02 | NZ_CALV00000000 | Soft tick (Ornithodoros sonrai) | 1 | I |
| B. elizabethae (BeUM) | LFMF00000000 | Wild rat (Rattus diardii) | 2 | II |
| B. elizabethae F9251 | NZ_AIMF00000000 | Human (Homo sapiens) | 2 | II |
| B. elizabethae Re6043vi | NZ_AILW00000000 | Polynesian rat (Rattus exulans) | 2 | II |
| B. queenslandensis AUST/NH15 | NZ_CALX00000000 | Wild rat (Rattus leucopus) | 2 | II |
| B. rattimassiliensis 15908 | NZ_AILY00000000 | Wild rat (Rattus norvegicus) | 2 | II |
| B. tribocorum BM1374166 | NZ_HG969192 | Wild rat (Rattus norvegicus) | 2 | II |
| B. tribocorum CIP 105476 | NC_010161 | Wild rat (Rattus norvegicus) | 2 | II |
| B. alsatica IBS 382 | NZ_AIME00000000 | Wild rabbit (Oryctolagus cuniculus) | 2 | IV |
| B. vinsonii spp. berkhoffii | NC_020301 | Dog (Canis lupus) | 2 | IV |
| B. birtlesii IBS 325 | NZ_CM001557 | Mouse (Apodemus spp.) | 3 | IV |
| B. taylorii 8TBB | NZ_AIMD00000000 | Vole (Microtus agrestis) | 3 | IV |
| B. washoensis Sb944nv | NZ_AILU00000000 | California ground squirrel(Spermophilus beecheyi) | 3 | I |
| B. doshiae NCTC 12862 | NZ_AILV00000000 | Vole (Microtus agrestis) | 3 | - |
| B. australis Aust/NH1 | NC_020300 | Kangaroo (Macropus giganteus) | 3 | III |
| B. bacilliformis KC583 | NC_008783 | Human (Homo sapiens) | 3 | III |
| B. bovis (BbUM) | MWVG00000000 | Crossbred cattle (Mafriwal) | 3 | III |
| B. bovis 91–4 | NZ_CM001844 | Cattle (Bos taurus) | 3 | III |
| B. bovis m02 | NZ_AGWB00000000 | Moose (Alces alces) | 3 | III |
| B. clarridgeiae 73 | NC_014932 | Cat (Cattus felis) | 3 | III |
| B. melophagi K-2C | NZ_AIMA00000000 | Sheep ked (Melophagus ovinus) | 3 | III |
| B. rochalimae ATCC BAA-1498 | NZ_AHPK00000000 | Human (Homo sapiens) | 3 | III |
| B. schoenbuchensis m07a | NZ_AGWC00000000 | Moose (Alces alces) | 3 | III |
| Brucella abortus 2308 | NC_007618 (Chr 1), NC_007624 (Chr 2) | Aborted fetus of a cow | N/A | N/A |
a) refer to Fig. 2 (i); b) refer to Fig. 2 (ii); N/A, not available.