Table 3.
RefSeq genome sequences reclassified in this study based on the genomic evidence presented herein (see Figures 5–7).
| DEFINITION (RefSeq classification) | Species/Reclassification* | Status | Fragments | BioProject | BioSample | PMID |
|---|---|---|---|---|---|---|
| Stenotrophomonas sp. 69-14 | S. acidaminiphila | Draft | 27 | PRJNA279279 | SAMN05660631 | NA |
| Stenotrophomonas maltophilia ZBG7B | S. chelatiphaga | Draft | 145 | PRJNA272355 | SAMN03280975 | 26659682 |
| Stenotrophomonas maltophilia AA1 | Genospecies 2 (Sgn2/Smc2) | Complete | 1 | PRJNA224116 | SAMN06130959 | 28275097 |
| Stenotrophomonas maltophilia 5BA-I-2 | Genospecies 3 | Draft | 4 | PRJNA224116 | SAMN02641498 | 24604648 |
| Stenotrophomonas sp. 92mfcol6.1 | Genospecies 3 | Draft | 11 | PRJNA224116 | SAMN04488690 | NA |
| Stenotrophomonas maltophilia PierC1 | Genospecies 3 | Draft | 59 | PRJEB8824 | SAMEA3309462 | 26276674 |
| Stenotrophomonas sp. RIT309 | Genospecies 3 | Draft | 45 | PRJNA224116 | SAMN02676627 | 24812212 |
| Stenotrophomonas sp. SC-N050 | Genospecies 3 | Draft | 24 | PRJNA224116 | SAMN05720615 | NA |
| Stenotrophomonas maltophilia SeITE02 | Genospecies 3 | Draft | 63 | PRJNA224116 | SAMEA3138997 | 24812214 |
| Stenotrophomonas sp. YR347 | Genospecies 3 | Draft | 11 | PRJNA224116 | SAMN05518671 | NA |
| Stenotrophomonas maltophilia B4 | Genospecies 4 | Draft | 180 | PRJNA224116 | SAMN03753636 | NA |
| Stenotrophomonas maltophilia Sm41DVV | Genospecies 4 | Draft | 26 | PRJNA323790 | SAMN05188789 | 27540065 |
| Stenotrophomonas maltophilia SmCVFa1 | Genospecies 4 | Draft | 30 | PRJNA323845 | SAMN05190067 | 27540065 |
| Stenotrophomonas maltophilia IAM 12423 | Genospecies 4 | Draft | 9 | PRJNA224116 | SAMN04487782 | NA |
| Stenotrophomonas maltophilia SIDR01 | genospecies 4 | Draft | 2 | PRJNA248909 | SAMN06040735 | NA |
| Stenotrophomonas maltophilia 13146 | S. bentonitica complex | Draft | 60 | PRJNA224116 | SAMN07237143 | NA |
| Stenotrophomonas maltophilia BR12S | S. bentonitica | Draft | 80 | PRJNA224116 | SAMN03456145 | 26472823 |
| Stenotrophomonas sp. HMSC10F07 | S. bentonitica | Draft | 63 | PRJNA269850 | SAMN03287020 | NA |
| Stenotrophomonas sp. LM091 | S. bentonitica | Complete | 1 | PRJNA344031 | SAMN05818440 | 27979933 |
| Stenotrophomonas maltophilia PML168 | S. bentonitica | Draft | 97 | PRJNA224116 | SAMEA2272452 | 22887661 |
| Stenotrophomonas sp. Leaf70 | S. nitritireducens | Draft | 11 | PRJNA224116 | SAMN04151613 | 26633631 |
| Stenotrophomonas sp. KCTC 12332 | S. terrae complex | Complete | 1 | PRJNA310387 | SAMN04451766 | 28689013 |
| Stenotrophomonas nitritireducens 2001 | S. terrae complex | Complete | 1 | PRJNA224116 | SAMN05428703 | NA |
| Stenotrophomonas maltophilia S028 | Stenotrophomonas sp. | Draft | 297 | PRJNA224116 | SAMN02469568 | 23144428 |
| Stenotrophomonas rhizophila QL-P4 | Stenotrophomonas sp. | Complete | 1 | PRJNA326321 | SAMN05276013 | NA |
*
The numbered genospecies correspond to novel unnamed species identified by Ochoa-Sánchez and Vinuesa (2017) and in this study. Strains assigned to the S. bentonitica and the S. terrae complexes. Most likely represent novel species related to these species, respectively.