Table 1.
Characteristics | CSS | CSA |
Scaffold length, Gb | 3.14 | 3.02 |
Contig length, Gb | 2.89 | 2.58 |
Scaffold number, >2 kb | 14,051 | 22,255 |
Longest scaffold, Mb | 7.31 | 3.51 |
Contig N50 length, kb | 67.07 | 19.96 |
Scaffold N50 length, Mb | 1.39 | 0.45 |
Transposons | ||
TE quantity, Gb (% of genome) | 1.86 (64) | 1.75 (58) |
BUSCO | ||
Missing core genes (%) | 6 (2.0) | 16 (5.2) |
Genome annotation | ||
Protein-coding genes | 33,932 | 36,951 |
Average gene length, bp | 4,053 | 3,549 |
Average exon length, bp | 259 | 237 |