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Number of OTUs detected in epicPCR versus 16S rRNA gene amplicon sequencing.
| sample | tetM | bla OXA-58 | int1 | qacEΔ1 |
|---|---|---|---|---|
| VI_I1 | 1.14% | 0.69% | 0.55% | 6.57% |
| VI_I2 | 1.04% | 0.52% | 1.51% | – |
| VI_I3 | 2.95% | 0.73% | 1.77% | 7.04% |
| VI_O1 | 0.68% | 0.22% | 0.00% | 0.19%a |
| VI_O2 | – | 0.24% | 0.34% | 0.64% |
| VI_O3 | 0.32% | – | 0.45% | – |
| Sample | tetM | bla OXA-58 | int1 | qacEΔ1 |
| SU_I1 | 2.90% | 0.40% | – | 2.78% |
| SU_I2 | – | 0.36% | 0.32% | – |
| SU_I3 | 3.89% | 2.22% | 0.59% | 5.31% |
| SU_O1 | 0.65% | – | – | – |
| SU_O2 | – | 0.23% | – | 0.36%a |
| SU_O3 | 1.62% | 0.29% | – | – |
