Table 1. Barley candidate reference genes and primer sequences.
Gene (Abbreviation) | GenBank Accession Number | Forward Primer | Reverse Primer | Amplicon Size (bp)a | PCR Efficiency (%) | R2 |
---|---|---|---|---|---|---|
Actin (ACT)[14] | AY14545.1 | GGCATGGAGTCTTCTGGAATCC | CCACCACTGAGCACTATGTTTC | 115 | 102.63 | 1.00 |
ADP-ribosylation factor 1-like protein (ADP)[15] | AK365041.1 | GCTCTCCAACAACATTGCCAAC | GAGACATCCAGCATCATTCATTCC | 77 | 105.97 | 0.99 |
ATP Binding Protein (ABC)[16] | AK365041.1 | ATCTGAGGTCTCGGTTCGGA | TCCTTCAGCTGACAACGGTC | 116 | 99.28 | 1.00 |
Cyclophilin (CYP)[14] | AK248688.1 | CCTGTCGTGTCGTCGGTCTAAA | ACGCAGATCCAGGAGCCTAAAG | 122 | 98.44 | 1.00 |
Glyceraldehyde 3-Phosphate Dehydrogenase (GAPDH)[17] | X60343.1 | GCCAGTTACTGTCTTTGGCGTC | GGCCTTGTCCTGTCAGTGAAG | 108 | 93.40 | 1.00 |
Glycine Rich RNA Binding Protein (GRBP)[17] | Z48624.1 | CGCCCAGTTATCCATCCATCTA | AAAAACACCACAGGACCGGAC | 112 | 99.47 | 1.00 |
Heat Shock Protein 70 (HSP70)[17] | AK354795.1 | GCTCAACATGGACCTCTTCAGG | CCGACAAGGACAACATCATGG | 101 | 96.2 | 1.00 |
Heat Shock Protein 90 (HSP90)[17] | AY325266.1 | CAAGAAGCTTGTCTCTGCCACC | ACAGCCCCTCGAACTTCTCCTT | 100 | 94.50 | 1.00 |
Small Nucleolar RNA 14 (SnoR14)[15] | AK373867.1 | GATGTTTATGTATGATAGTCTGTC | GTCGGGATGTATGCGTGTC | 67 | 98.73 | 1.00 |
Small Nucleolar RNA 23 (SnoR23)[15] | AK373724.1 | TCGGCAGTGGTGTCATC | CTCAGTGGAAAGAGAAGTCG | 64 | 104.63 | 1.00 |
Translationally Controlled Tumor Protein (TCTP)[16] | AF230786.1 | TTCCGTCTTCAGGAGCAACC | ATGCTCTCGCCCACAAAGAA | 177 | 100.46 | 1.00 |
Tubulin Alpha-2 Chain (α-TUB)[15] | U40042.1 | GTCCACCCACTCCCTCCTTG | CGGCGGCAGATGTCATAGATG | 78 | 100.77 | 1.00 |
Ubiquitin (UBQ)[18] | AK249354.1 | TCAAGGTGAAGACACTTACTGG | CATAGATGAGCCTCTGTTGAAC | 128 | 96.71 | 1.00 |
aAmplicons located in the coding region.