Table 2.
Bacterial species | Total no. of isolates (n = 89) | No. of isolates resulting in the indicated score attained using: | |||||||
---|---|---|---|---|---|---|---|---|---|
Bruker Reference Library V.6.0.0.0 | Extended in-house database | ||||||||
≥2.0 | 1.7–1.9 | <1.7 | Incorrect species identification | ≥2.0 | 1.7–1.9 | <1.7 | Incorrect species identification | ||
Type and reference (n = 15)a | |||||||||
T. paurometabola | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
T. inchonensis | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
T. strandjordii | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
T. pulmonis | 2 | 0 | 1 | 1 | 2 | 2 | 0 | 0 | 0 |
T. tyrosinosolvens | 2 | 2 | 0 | 0 | 2 | 2 | 0 | 0 | 0 |
T. pseudospumae | 2 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 0 |
T. spumae | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 |
T. soli | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
T. serpentis | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
T. hongkongensis | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
T. serpentis | 2 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 0 |
Clinical or veterinary (n = 74) | |||||||||
T. tyrosinosolvens | 31 | 20 | 10 | 1 | 31 | 31 | 0 | 0 | 0 |
T. pulmonis | 25 | 0 | 9 | 16 | 25 | 25 | 0 | 0 | 0 |
T. hongkongensis | 2 | 0 | 0 | 2 | 2 | 1 | 1 | 0 | 1 |
T. sinensis | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
T. strandjordii | 1 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
N. nova | 3 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 |
N. cyriacigeorgica | 2 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
N. brasiliensis | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
N. farcinica | 2 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
R. equi | 2 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
R. erythropolis | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
G. sputi | 2 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
G. bronchialis | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
a Among the 15 type and reference strains, only 6 (40.0%) showed the correct genus with score ≥1.7 by MALDI-TOF MS using the Bruker Reference Library V.6.0.0.0