Table 5.
Identification of predicted protein sequences using TransDecoder.
| Types of peptide sequence | Number of contigs |
|---|---|
| Number of predicted peptides (TransDecoder) | 66,167 |
| Complete (ORF with both start and stop codons) | 41,213 |
| 5′ partial (ORF missing a start codon) | 14,999 |
| 3′ partial (ORF missing the stop codon) | 5,420 |
| Internal (ORF with no start or stop codons) | 4,535 |
| Annotation Source | |
| Pfam domains | 9,695 |
| TMHMM | 6,167 |
| SignalP | 1,099 |
| GO annotation from Swiss-Prot/TrEMBL | 5,292 |
| KEGG annotation using KAAS | 4,887 |