Table 1.
List of differentially induced genes in both transgenic rice plants Ubi:DaCBF4 and Ubi:DaCBF7 under normal control or cold stress conditions when compared to wild type plants.
| Locus ID | Annotations—Description | RNA-seq analysis; Baggerley's test | |||
|---|---|---|---|---|---|
| Ubi:DaCBF4 vs. wild-type | Ubi:DaCBF7 vs. wild-type | ||||
| Fold change | FDR p-value correction | Fold change | FDR p-value correction | ||
| NORMAL CONDITION | |||||
| Os11g10850 | Dirigent | 15.42 | 3.26E−02 | 210 | 1.09E-03 |
| Os12g43380 | Thaumatin | 5.17 | 1.54E−04 | 11.21 | 0 |
| Os09g36680 | Ribonuclease T2 family domain containing protein | 3.06 | 0 | 2.89 | 0 |
| Os01g04050 | BBTI12—Bowman-Birk type bran trypsin inhibitor | 2.26 | 2.43E−04 | 3.90 | 1.50E−03 |
| Os12g02320 | LTPL12—Protease inhibitor family protein | 1.60 | 1.51E−02 | 1.94 | 1.11E−10 |
| Os03g01300 | LTPL114—Protease inhibitor family protein | 1.60 | 2.89E−11 | 11.98 | 2.92E−08 |
| Os10g22630 | Expressed protein | 614.27 | 1.13E−11 | 453.35 | 0 |
| Os03g02470 | Expressed protein | 211.86 | 1.41E−02 | 457 | 8.73E−09 |
| Os01g15270 | Expressed protein | 1.77 | 9.15E−08 | 2.04 | 4.90E−06 |
| COLD STRESS, 1 DAY | |||||
| Os02g43970 | AP2 domain containing protein | 30.60 | 0 | 385.13 | 2.84E−07 |
| Os03g45280 | Dehydrin (OsLEA24) | 5.22 | 0 | 1.36 | 1.60E−11 |
| Os09g35030 | Dehydration-responsive element-binding protein | 2.91 | 1.81E−05 | 1.77 | 9.62E−11 |
| Os08g37670 | Plastocyanin-like domain containing protein | 2.82 | 0 | 4.26 | 0 |
| Os01g09220 | Transposon protein putative CACTA En/Spm sub-class | 2.16 | 6.39E−07 | 3.44 | 0 |
| Os07g48630 | Ethylene-insensitive 3 | 2.06 | 7.36E−12 | 1.39 | 2.01E−02 |
| Os01g67480 | Helix-loop-helix DNA-binding domain containing protein | 2.00 | 1.97E−03 | 1.67 | 2.92E−02 |
| Os09g36680 | Ribonuclease T2 family domain containing protein | 1.69 | 3.44E−04 | 3.56 | 0 |
| Os01g21250 | Late embryogenesis abundant protein (OsLEA9) | 1.59 | 0 | 1.53 | 0 |
| Os04g58710 | AMP-binding domain containing protein | 1.22 | 2.21E−07 | 1.97 | 0 |
| Os01g06882 | Expressed protein | 1154.57 | 3.62E−03 | 378 | 3.61E−07 |
| Os04g01330 | Expressed protein | 535.30 | 1.17E−06 | 385.13 | 0 |
| Os10g22630 | Expressed protein | 279.51 | 9.38E−05 | 388.62 | 0 |
| Os03g02470 | Expressed protein | 191.20 | 6.65E−03 | 291 | 2.63E−05 |
| Os06g09900 | Expressed protein | 1.79 | 1.32E−10 | 1.25 | 9.13E−03 |
| COLD STRESS, 6 DAY | |||||
| Os02g43970 | AP2 domain containing protein | 106.23 | 2.94E−08 | 99.36 | 1.90E−05 |
| Os02g03280 | Transmembrane BAX inhibitor motif-containing protein | 3.84 | 0 | 1.27 | 1.26E−03 |
| Os10g33800 | Lactate/malate dehydrogenase | 2.26 | 6.68E−04 | 1.82 | 8.47E−10 |
| Os03g45280 | Dehydrin (OsLEA24) | 1.93 | 6.41E−11 | 1.72 | 7.26E−11 |
| Os04g16770 | Photosynthetic reaction center protein | 1.81 | 0 | 1.39 | 0 |
| Os09g25320 | Ubiquitin family protein | 1.79 | 4.38E−02 | 1.45 | 2.82E−03 |
| Os08g35420 | Photosynthetic reaction center protein | 1.50 | 0 | 2.67 | 0 |
| Os01g68300 | Expressed protein | 2.99 | 1.30E−02 | 2.90 | 0 |
| Os12g39930 | Expressed protein | 1.62 | 0 | 5.96 | 0 |
| Os10g21190 | Expressed protein | 1.59 | 0 | 4.66 | 0 |
Results for Ubi:DaCBF7 were adopted from Byun et al. (2015).