Table 2.
List of differentially down-regulated genes belonging to GO term “Photosynthesis” (GO:0015979) in both transgenic rice plants Ubi:DaCBF4 and Ubi:DaCBF7under normal control or cold stress condition when compared to wild type plants.
| Locus ID | Annotations—description | RNA-seq analysis; Baggerley's test | |||
|---|---|---|---|---|---|
| Ubi:DaCBF4 vs. wild-type | Ubi:DaCBF7 vs. wild-type | ||||
| Fold change | FDR p-value correction | Fold change | FDR p-value correction | ||
| NORMAL CONDITION | |||||
| Os01g41710 | Chlorophyll A-B binding protein | −1.760 | 1.782E−22 | −2.044 | 0 |
| Os08g10020 | Photosystem II 10 kDa polypeptide chloroplast precursor | −1.391 | 8.340E−06 | −1.591 | 2.654E−120 |
| COLD STRESS, 1 DAY | |||||
| Os08g35420 | Photosynthetic reaction center protein | −2.455 | 2.951E−72 | −10.319 | 3.584E−189 |
| Os07g37240 | Chlorophyll A-B binding protein | −2.367 | 2.021E−06 | −1.244 | 3.942E−10 |
| Os04g16874 | Photosystem II 44 kDa reaction center protein | −1.741 | 9.320E−06 | −5.394 | 1.856E−16 |
| Os04g16872 | Photosystem II D2 protein | −1.428 | 1.597E−02 | −4.161 | 6.194E−19 |
Results for Ubi:DaCBF7 were adopted from Byun et al. (2015).