Table 1.
Genome assembly and annotation of the A. ipaensis.
| Genome features | Measures |
|---|---|
| ASSEMBLY FEATURES | |
| Number of scaffolds | 79,408 |
| Total span | 1,391,700,926 bp (~1.39 G) |
| N50 (scaffolds) | 170,050 bp |
| Longest scaffold | 1,172,168 bp |
| Number of contigs | 1,008,989 |
| N50 (contigs) | 8,067 bp |
| Longest contig | 81,804 bp |
| GC content | 36.70% |
| GENE MODELS | |
| Number of gene models | 39,704 |
| Mean transcript length | 3,741 bp |
| Mean coding sequence length | 1,246 bp |
| Mean number of exons per gene | 4.99 |
| Mean exon length | 250 bp |
| Mean intron length | 625 bp |
| Mean gene density | 35.05 Kb |
| Number of genes annotated | 39,645 |
| Number of genes unannotated | 59 |
| NON-PROTEIN CODING GENES/ELEMENTS | |
| Number of pre-miRNA genes | 71 |
| Mean length of pre-miRNA genes | 123 bp |
| Pre-miRNA genes share in genome | 0.000590% |
| Number of pre-rRNA fragments | 313 |
| Mean length of pre-rRNA fragments | 186 bp |
| Pre-rRNA fragments share in genome | 0.003928% |
| Number of pre-tRNA genes | 2,914 |
| Mean length of pre-tRNA genes | 75 bp |
| Pre-tRNA genes share in genome | 0.014836% |
| Number of pre-snRNA genes | 152 |
| Mean length of pre-snRNA genes | 111 bp |
| Pre-snRNA genes share in genome | 0.001139% |
| Total transposable elements, bp (TEs) | 1,125,924,736 |
| Transposable element percent in genome | 75.97% |