Table 1. Genomic data of JAZ and MYC gene family in woodland strawberry (Fragaria vesca) and Arabidopsis, and their corresponding CDS and protein lengths.
Gene name a | Gene ID | Chromosome | Start | End | Gene (bp) |
CDS (bp) | ORF (aa) |
---|---|---|---|---|---|---|---|
FvJAZ1 / FvTIFY10A | 101302102 | 1 | 6964291 | 6965689 | 1349 | 909 | 302 |
FvJAZ4-1 / FvTIFY6B.1 | 101298700 | 4 | 19330995 | 19333777 | 1934 | 1158 | 385 |
FvJAZ4-2 / FvTIFY6B.2 | 101298700 | 4 | 19330995 | 19333777 | 1960 | 1155 | 384 |
FvJAZ4-3 / FvTIFY6B.3 | 101298700 | 4 | 19330995 | 19333777 | 1701 | 1083 | 360 |
FvJAZ5 / FvTIFY11A-like | 101305492 | 6 | 24774113 | 24774773 | 1016 | 558 | 185 |
FvJAZ7 / FvTIFY5B | 105352369 | 6 | 27798266 | 27799489 | 814 | 372 | 123 |
FvJAZ8.1 / FvTIFY5A | 101295112 | 3 | 2612521 | 2613468 | 862 | 393 | 130 |
FvJAZ8.2 / FvTIFY5B-like | 105350256 | 3 | 2616234 | 2616765 | 794 | 420 | 139 |
FvJAZ9 / FvTIFY6B | 101303423 | 5 | 9961254 | 9964696 | 1678 | 1116 | 371 |
FvJAZ10 / FvTIFY9 | 101299545 | 1 | 1660803 | 1661807 | 1489 | 576 | 191 |
FvJAZ11 / FvTIFY3A-like | 105349490 | Unknown | 159768 | 161085 | 561 | 561 | 186 |
FvJAZ12 / FvTIFY3B | 101312185 | 1 | 7358182 | 7359713 | 1172 | 609 | 202 |
FvMYC2 | 101299702 | 7 | 2955350 | 2956825 | 1955 | 1476 | 491 |
FvMYC2-like | 101308180 | 5 | 21462454 | 21464502 | 2690 | 2049 | 682 |
AtJAZ1 / AtTIFY10A | AT1G19180 | 1 | 6622312 | 6623271 | 1892 | 762 | 253 |
AtJAZ2 / AtTIFY10B | AT1G74950 | 1 | 28148919 | 28150258 | 1873 | 750 | 249 |
AtJAZ3 / AtTIFY6B | AT3G17860 | 3 | 6119968 | 6122691 | 3338 | 1059 | 352 |
AtJAZ4 / AtTIFY6A | AT1G48500 | 1 | 17931658 | 17934255 | 3273 | 834 | 310 |
AtJAZ5 / AtTIFY11A | AT1G17380 | 1 | 5955654 | 5957070 | 2357 | 825 | 274 |
AtJAZ6 / AtTIFY11B | AT1G72450 | 1 | 27274336 | 27276136 | 2595 | 810 | 269 |
AtJAZ7 / AtTIFY5B | AT2G34600 | 2 | 14573172 | 14573718 | 923 | 447 | 148 |
AtJAZ8 / AtTIFY5A | AT1G30135 | 1 | 10596516 | 10597095 | 990 | 396 | 131 |
AtJAZ9 / AtTIFY7 | AT1G70700 | 1 | 26654951 | 26656804 | 2822 | 804 | 243 |
AtJAZ10 / AtTIFY9 | AT5G13220 | 5 | 4219001 | 4220502 | 2292 | 504 | 197 |
AtJAZ11 / AtTIFY3A | AT3G43440 | 3 | 15367670 | 15369774 | 2612 | 717 | 238 |
AtJAZ12 / AtTIFY3B | AT5G20900 | 5 | 7090883 | 7092201 | 1836 | 564 | 187 |
AtJAZ13 | AT3G22275 | 3 | 7878807 | 7879810 | 827 | 378 | 125 |
AtMYC2 | AT1G32640 | 1 | 11799042 | 11800913 | 3289 | 1872 | 623 |
AtMYC3 | AT5G46760 | 5 | 18974231 | 18976009 | 2569 | 1779 | 592 |
AtMYC4 | AT4G17880 | 4 | 9933702 | 9935471 | 2360 | 1770 | 589 |
AtMYC5 | AT5G46830 | 5 | 19002719 | 19004254 | 1821 | 1536 | 511 |
a F. vesca (Fv) and Arabidopsis (At) gene sequences were obtained from the National Center for Biotechnology Information NCBI, https://www.ncbi.nlm.nih.gov/genome) and Arabidopsis database (TAIR10, http://www.arabidopsis.org), respectively.