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. Author manuscript; available in PMC: 2019 Mar 22.
Published in final edited form as: Cell. 2018 Mar 8;173(1):62–73.e9. doi: 10.1016/j.cell.2018.02.026
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit anti-PGK1 polyclonal Antibodies-online.com Cat# ABIN568371
Rabbit anti-IAPP polyclonal Sigma Aldrich Cat# HPA053194
Donkey anti-mouse secondary 800CW dye conjugate LI-COR Cat# 926-32212
Donkey anti-rabbit secondary 680CW dye conjugate LI-COR Cat# 926-68073
Rabbit anti-mouse secondary polyclonal HRP conjugate Sigma Aldrich Cat# A-9044
Bacterial and Virus Strains
Escherichia coli DH5alpha ATCC Cat# 69021
Biological Samples    
Chemicals, Peptides, and Recombinant Proteins
Nourseothricin dihydrogen sulfate (ClonNAT) Werner BioAgents Cat# 5.005.000
G418 (geneticin) Life Technologies Cat# 10131027
B-Estradiol Sigma Aldrich Cat# E8875-5G
Propidium iodide Sigma Aldrich Cat# P4864
Lopinavir Sigma Aldrich Cat# SML1222-10MG
Yeast nitrogen base VWR Cat# 90004-146
Complete supplement mixture (CSM) media Sunrise Science Products Cat# 1001-100
CSM lacking uracil Sunrise Science Products Cat# 1004-100
CSM lacking leucine Sunrise Science Products Cat# 1005-100
CSM lacking histidine Sunrise Science Products Cat# 1006-100
CSM lacking uracil and histidine Sunrise Science Products Cat# 1009-100
Critical Commercial Assays
TruSeq RNA Library Prep Kit Ilumina  
Deposited Data
RNASeq GEO GSE104172
Experimental Models: Cell Lines
INS-1 823/13 Newgard Lab CVCL_7226
Experimental Models: Organisms/Strains
S. cerevisiae: Strain background: W303 ATCC Cat# 201238
S. cerevisiae: Strain background: BY4741 ATCC Cat# 201388
Oligonucleotides
Please see Table S5    
Recombinant DNA
Please see Table S6 for all plasmids    
Software and Algorithms
GraphPad Prism GraphPad Software https://www.graphpad.com/scientific-software/prism/
SGA Score algorithm Baryshnikova et al, 2010  
Cell Profiler Kamentsky et al., 2011 cellprofiler.org
TopHat Trapnell et al., 2009 https://ccb.jhu.edu/software/tophat/index.shtml
htseq-count Anders et al., 2015  
EdgeR Robinson et al., 2010  
Picard   Broad Institute http://broadinstitute.github.io/picard/
Burrows-Wheeler Aligner (BWA)   http://bio-bwa.sourceforge.net/
GATK Broad Institute https://software.broadinstitute.org/gatk/
Variant Effect Predictor (VEP) McLaren et al., 2016 https://useast.ensembl.org/info/docs/tools/vep/index.html
EPACTS   http://csg.sph.umich.edu/kang/epacts/download/index.html
EIGENSTRAT   https://github.com/DReichLab/EIG/tree/master/EIGENSTRAT
MATLAB The Mathworks Inc. https://www.mathworks.com/products/matlab.html
FlowJo v8 FlowJo, LLC. https://www.flowjo.com/solutions/flowjo/downloads
ImageJ   https://imagej.net/Welcome
Other