Table 1.

Summary of SNB and effector-sensitivity QTL identified from this study

Treatment	Markera	Chromosome	Gene	Position (cM)b	P value	Allele for resistance	Score	Effect
SnToxA	1168841	5BL	Tsn1	137.096	3.548e−10	0	9.45	1.92
SnTox1	1268227	1BS	Snn1	7.025	9.120e−11	0	10.04	1.14
	1195188	1BS	Snn1	7.025	8.913e−08	0	7.05	1.05
	1099649	1BS	Snn1	7.025	1.097e−10	0	9.96	1.16
SnTox3	1126921	5BS	Snn3	4.119	7.586e−15	0	14.12	2.06
	1673475	5BS	Snn3	5.103	2.818e−13	0	12.55	1.87
	1151694	5BS	Snn3	5.452	9.550e−13	0	12.02	1.89
	1232949	5BS	Snn3	5.452	1e−15	0	15.00	2.07
	2276671	5BS	Snn3	6.153	4.074e−13	0	12.39	1.89
SN15 SNB	1268227	1BS	Snn1	7.025	5.623e−07	0	6.25	0.99
	1195188	1BS	Snn1	7.025	6.457e−05	0	4.19	0.87
	2248448	2DS	Snn2 c	195.480	2.951e−04	0	3.51	1.26
	1254900	3AL		209.700	2.512e−04	1	3.60	− 1.74
	1676515	4ALd		240.629	2.951e−04	1	3.53	− 1.21
	1104887	4BS		5.495	1.778e−04	1	3.75	− 0.98
	3939782	5AS		40.050	8.318e−05	0	4.08	1.03
	1126921	5BS	Snn3	4.119	6.310e−05	0	4.20	0.93
	1151694	5BS	Snn3	5.452	4.898e−05	0	4.31	0.93
	1232949	5BS	Snn3	5.452	2.239e−05	0	4.65	0.94
	2276671	5BS	Snn3	6.153	1.047e−04	0	3.98	0.87
	2374474	7AS		110.881	1.445e−04	1	3.84	− 1.12
toxa13 SNB	1231149	2DL	Snn7 c	140.670	1.950e−04	0	4.01	0.75
	1126530	5AS		72.798	5.623e−05	0	4.25	0.87
	1118447	7DL		231.408	4.898e−05	0	4.27	0.85

Details of significantly associated markers, chromosomal location, − log₁₀(P) score and effect for each marker are provided. Manhattan plots are presented in Supplemental data 3

^aAll markers shown are DArT

^bAs in the consensus map generated by Diversity Arrays Technology Pty Ltd

^cEstimation based on co-localising markers published elsewhere

^dBlastn against the Triticum aestivum TGACv1 genome sequence hits 4BL as of 5th Oct 2017