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. 2018 May 10;19:58. doi: 10.1186/s13059-018-1431-3

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Results from the full 68 k PBMC data analysis. a A composite tSNE plot of the GiniClust2 results; rare cell types are circled. b A confusion map showing similarities between GiniClust2 clusters and reference labels. Values represent the proportion of cells per reference label that are in each cluster. c A bubble plot showing expression of cluster-specific genes. Size represents the percentage of cells within each cluster with non-zero expression of each gene, while color represents the average normalized UMI counts for each cluster and gene