Table 1.
The comparison of methods on the HOMSTRAD dataset
| Metrics | M1 | M2 | M3 | M4 | M5 | M6 | Ref. |
|---|---|---|---|---|---|---|---|
| Lcore | 146.6 | 139.4 | 135.6 | 130.2 | 117.2 | 138.6 | 134.1 |
| ccRMSD | 1.3 | 1.29 | 1.26 | 1.26 | 1.21 | 1.22 | 1.24 |
| ccTM-score | 0.674 | 0.641 | 0.618 | 0.602 | 0.546 | 0.642 | 0.619 |
| Lali | 173.8 | 167.8 | 166 | 162.7 | 154.3 | NA | 164.4 |
| RMSD | 1.46 | 1.48 | 1.48 | 1.49 | 1.50 | NA | 1.48 |
| TM-score | 0.784 | 0.758 | 0.746 | 0.735 | 0.7 | NA | 0.742 |
| ACC | 0.934 | 0.914 | 0.918 | 0.918 | 0.879 | NA | 1 |
| RT | 2.48 | 31.94 | 1.7 | 19.72 | 187.3 | 34.03 | NA |
Note: M1–M6 represents mTM-align, Matt, MAMMOTH-mult, MUSTANG, Promals3D and MultiProt, respectively. Ref. denotes the reference alignment given in the HOMSTRAD database. The best results are highlighted in bold type.