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. 2018 Jan 10;5(Pt 2):130–140. doi: 10.1107/S2052252517017833

Table 6. Shape entropy in the protein condensed phase: polar cage.

The occurrence of shape entropy is determined by the fluctuation of 49 surface-exposed amino-acid residues in the crystal contacts of the transcriptional antiterminator (PDB entry 3gwh). Differences between Cα atoms and the terminal amino-acid residues are shown as a measure of surface conformational entropy. Some amino-acid side chains of residues located at the edges of the asymmetric unit switch directions, occupy neighboring cage walls within the ensemble or lose contact with the symmetry-related molecule.

Ensemble member No. Differences in Cα atoms (Å) Differences in terminal side-chain atoms (Å) Occurrence of side chains in cage walls
1 0.98 1.20 −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1
2 0.90 1.81 −100, −1−10, 001, −10−1, 00−1, 100, 0−10, 0−1−1
3 0.81 1.36 −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1
4 1.03 1.50 −100, −1−10, 001, −10−1, 00−1, 100, 0−10, 0−1−1
5 0.73 1.38 −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1
6 0.75 1.25 −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1
7 0.79 1.37 −100, −1−10, 001, −10−1, 00−1, 100, 0−10, 001, 0−1−1
8 1.08 1.51 −100, −1−10, 001, −10−1, 100, 0−10, 0−1−1, 00−1
9 0.87 1.52 −100, −1−10, 001,−10−1, 00−1, 100, 0−10, 0−1−1, −10−1
10 0.84 1.76 −100, −1−10, 001, 00−1, −10−1, 100, 0−10, −10−1, 0−1−1
Minimum 0.73 1.20  
Maximum 1.08 1.81