Table 6. Shape entropy in the protein condensed phase: polar cage.
The occurrence of shape entropy is determined by the fluctuation of 49 surface-exposed amino-acid residues in the crystal contacts of the transcriptional antiterminator (PDB entry 3gwh). Differences between Cα atoms and the terminal amino-acid residues are shown as a measure of surface conformational entropy. Some amino-acid side chains of residues located at the edges of the asymmetric unit switch directions, occupy neighboring cage walls within the ensemble or lose contact with the symmetry-related molecule.
Ensemble member No. | Differences in Cα atoms (Å) | Differences in terminal side-chain atoms (Å) | Occurrence of side chains in cage walls |
---|---|---|---|
1 | 0.98 | 1.20 | −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1 |
2 | 0.90 | 1.81 | −100, −1−10, 001, −10−1, 00−1, 100, 0−10, 0−1−1 |
3 | 0.81 | 1.36 | −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1 |
4 | 1.03 | 1.50 | −100, −1−10, 001, −10−1, 00−1, 100, 0−10, 0−1−1 |
5 | 0.73 | 1.38 | −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1 |
6 | 0.75 | 1.25 | −100, −1−10, 001, 00−1, −10−1, 100, 0−10, 0−1−1 |
7 | 0.79 | 1.37 | −100, −1−10, 001, −10−1, 00−1, 100, 0−10, 001, 0−1−1 |
8 | 1.08 | 1.51 | −100, −1−10, 001, −10−1, 100, 0−10, 0−1−1, 00−1 |
9 | 0.87 | 1.52 | −100, −1−10, 001,−10−1, 00−1, 100, 0−10, 0−1−1, −10−1 |
10 | 0.84 | 1.76 | −100, −1−10, 001, 00−1, −10−1, 100, 0−10, −10−1, 0−1−1 |
Minimum | 0.73 | 1.20 | |
Maximum | 1.08 | 1.81 |