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. 2018 Mar 2;74(Pt 3):183–193. doi: 10.1107/S2059798318002310

Table 2. Solution of distantly homologous targets using search models derived from CONCOORD ensembles.

Branch of the His phosphatase superfamily PDB code Overall sequence identity to 3c7t in MAFFT sequence alignment (%) GESAMT structural alignment: No. of superimposed residues, Cα r.m.s.d. Length in crystal structure Resolution (Å) No. of successful search models Residues in successful search models (No. of solutions with that number of residues) Side-chain treatments in successful search models (No. of solutions for each side-chain treatment) SHELXE CC SHELXE ACL Final R free Solved by MrBUMP with the 3c7t crystal structure or manually derived derivatives?
1 1ujb 24 139, 1.85 156 2.1 14/180 51 (7), 64 (2), 77 (3), 103 (2) PolyAla (10), reliable (3), all atom (1) 48.66–52.28 36–155 0.235–0.259 No
2qni 12 148, 2.08 194 1.8 61/180 25 (9), 38 (9), 51 (9), 64 (9), 77 (6), 90 (6), 103 (6), 116 (3), 129 (3), 142 (1) PolyAla (27), reliable (21), all atom (13) 45.89–49.21 29–62 0.215–0.320 Yes
1e59 17 174, 2.37 239 1.3 0/540 No
4eo9 18 173, 2.34 240 2.45 1/540 90 Reliable 39.45 38 0.230 No
  19 156, 2.18 202 2.3 1/540 77 PolyAla 24.72 16 0.232†† No
3dcy 18 150, 2.20 269 1.75 5/180 38, 51 (3), 64 PolyAla (5) 46.13–46.99 37–79 0.302–0.317 No
2 1qwo 11 153, 3.05 434 1.5 1/540 90 PolyAla 43.61 83 0.216 No
1dkm 16 151, 2.71 410 2.25 0/540 No

A denominator of 180 means that success was achieved among the 180 search models deriving from the first cluster of CONCOORD outputs for 3c7t. A denominator of 540 means that the first cluster did not produce a successful search model and that search models from clusters 2 and 3 were therefore trialled.

The range is shown for multiple solutions.

§

Required additional rounds of ARP/wARP or Buccaneer to obtain this value.