Table 1.

Enrichment test of the differentiation of trait-associated SNPs (clumped at P < 5 × 10⁻⁶) in allele frequency against the control SNPs among the three populations in GERA and 1000G

Trait	GERA			1000G
	Number of SNPs	Mean FST	P-value	Number of SNPs	Mean FST	P-value
Height	1044	0.090	2.46 × 10−5	1099	0.140	4.93 × 10−6
BMI	157	0.093	0.038	179	0.136	0.344
WHRadjBMI	82	0.109	2.77 × 10−4	92	0.158	2.62 × 10−3
HDL	175	0.093	0.017	181	0.128	0.672
LDL	143	0.079	0.804	139	0.115	0.421
EAY	312	0.083	0.359	328	0.139	0.021
AD	43	0.070	0.614	46	0.108	0.545
CAD	101	0.079	0.731	102	0.119	0.892
SCZ	334	0.093	3.96 × 10−5	337	0.145	6.83 × 10−5
T2D	40	0.082	0.885	38	0.129	0.772

Bold values represent the results that are significant in GERA and replicated in 1000G, correcting for multiple tests