Table 1.
The Information of all detected single nucleotide polymorphisms (SNPs).
| SNP_ID | Genome_pos | Mut_typea | Mut_baseb | Mut_proc | Ref_Gene | Product | COG_categoriesd | KO_No. | Pathway_No.e |
|---|---|---|---|---|---|---|---|---|---|
| SNP01 | 1375280 | Non-syn | C-T | R61C | LBP RS06445 | Membrane protein | – | – | – |
| SNP02 | 1059218 | Non-syn | G-A | G598S | LBP RS04920 | Phosphatidic acid phosphatase | COG0671[I] | K19302 | Metabolism[PATH:ko00550] |
| SNP03 | 1760063 | Nonsense | C-T | Q808X | LBP RS08305 | Epimerase | COG1087[M] | K01784 | Metabolism[PATH:ko00052,ko00520] |
| SNP04 | 2090448 | Non-syn | G-T | D358Y | LBP RS10060 | Hypothetical protein | – | – | – |
| SNP05 | 1441158 | syn | G-T | V474V | LBP RS06740 | Phosphohydrolase | – | – | – |
| SNP06 | 710832 | Non-syn | A-G | S160G | LBP RS03240 | Bifunctional amino acid aminotransferase/2-hydroxyacid dehydrogenase | COG1052[CHR] | K03778 | Metabolism[PATH:ko00620] |
| SNP07 | 1859386 | Nonsense | G-T | E574X | LBP RS08745 | 23S rRNA methyltransferase | COG0500[QR] | K00563 | – |
| SNP08 | 3005584 | Syn | A-G | P1509P | LBP RS14195 | Hypothetical protein | – | – | – |
| SNP09 | 2188536 | Syn | T-G | G744G | LBP RS10480 | 1-deoxy-D-xylulose-5-phosphate synthase | COG1154[HI] | K01662 | Metabolism[PATH:ko00730,ko00900] |
| SNP10 | 2228459 | Syn | C-T | Y81Y | LBP RS10685 | Ribonucleotide reductase assembly protein NrdI | COG1780[F] | K03647 | – |
| SNP11 | 2253167 | Non-syn | C-A | P601T | LBP RS10775 | Orotidine 5′-phosphate decarboxylase | COG0284[F] | K01591 | Metabolism[PATH:ko00240] |
| SNP12 | 1929398 | Syn | C-T | T2319T | LBP RS09215 | Hypothetical protein | – | – | – |
| SNP13 | 2570686 | Non-syn | G-A | D1942N | LBP RS12200 | Cell wall anchor protein | – | – | – |
| SNP14 | 2196065 | Syn | C-A | V1275V | LBP RS10515 | Oligoendopeptidase | COG1164[E] | – | – |
| SNP15 | 608137 | Non-syn | A-G | T2746A | LBP RS02810 | Excinuclease ABC subunit A | COG0178[L] | K03701 | Genetic Information Processing [PATH:ko03420] |
| SNP16 | 2076616 | Intergenic | T-C | – | – | – | – | – | – |
| SNP17 | 879878 | Syn | T-C | G693G | LBP RS04100 | ABC transporter permease | COG0619[P] | K16785 | Environmental Information Processing [PATH:ko02010] |
| SNP18 | 928900 | Non-syn | C-T | T707I | LBP RS04305 | Thiol reductant ABC exporter subunit CydD | COG4988[CO] | K16013 | Environmental Information Processing [PATH:ko02010] |
| SNP19 | 1800964 | Non-syn | G-A | M99I | LBP RS08475 | GTP-binding protein | COG1217[T] | K06207 | – |
aThe mutation type of the SNPs, non-syn, non-synonymous; syn, synonymous. The mutation type of nucleotides on genome of reference-reisolates. The mutation type and position of amino acids corresponding to SNPs. INFORMATION STORAGE AND PROCESSING: [L]Replication, recombination and repair; METABOLISM: [C]Energy production and conversion;[E]Amino acid transport and metabolism;[F]Nucleotide transport and metabolism;[H]Coenzyme transport and metabolism;[I]Lipid transport and metabolism;[P]Inorganic ion transport and metabolism;[Q]Secondary metabolites biosynthesis, transport and catabolism; CELLULAR PROCESSES AND SIGNALING: [M]Cell wall/membrane/envelope biogenesis;[O]Posttranslational modification, protein turnover, chaperones;[T]Signal transduction mechanisms; POORLY CHARACTERIZED: [R]General function prediction only. Metabolism: [ko00550]Glycan biosynthesis and metabolism; Peptidoglycan biosynthesis; [ko00052]Carbohydrate metabolism; Galactose metabolism; [ko00520]Carbohydrate metabolism; Amino sugar and nucleotide sugar metabolism; [ko00620]Carbohydrate metabolism; Pyruvate metabolism; [ko00730]Metabolism of cofactors and vitamins; Thiamine metabolism; [ko00900]Metabolism of terpenoids and polyketides; Terpenoid backbone biosynthesis; [ko00240]Nucleotide metabolism; Pyrimidine metabolism. Genetic Information Processing: [ko03420] Replication and repair; Nucleotide excision repair. Environmental Information Processing: [ko02010] Membrane transport; ABC transporters.