TABLE 1.
Molecular characteristics of the H7N9 viruses isolated from poultry and humansa
H7N9 virus | HA (H3 numbering) |
NA (N2 numbering) |
M2 |
PB2 |
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Cleavage site | Residue 186 | Residues 224–228 | Residue 292 | Stalk deletion | Residue 31 | Residue 526 | Residue 588 | Residue 591 | Residue 627 | Residue 701 | |
A/GD/Th008/2017 | PKRKRTARG | V | NGQSG | K | 69–73 | N | K | V | Q | E | D |
A/SZ/Th001/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/SZ/Th002/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/SZ/Th003/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
A/SZ/Th004/2017 | PKG----RG | V | NGLSG | K | 69–73 | N | K | V | Q | E | D |
A/GD/Th005/2017 | PKGKRIARG | V | NGQSG | R | 69–73 | N | R | A | Q | K | D |
A/SZ/Th006/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/SZ/Th007/2017 | PKRKRTARG | V | NGQSG | K | 69–73 | N | K | V | Q | K | D |
A/SZ/Th008/2017 | PKRKRTARG | V | NGHSG | K | 69–73 | N | R | A | Q | E | N |
A/FJ/QZ-Th001/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/FJ/QZ-Th002/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/FJ/QZ-Th005/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/YN/YN001/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
A/YN/YN002/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | K | D |
CK/GD/SZBJ0011-O/2017 | PKRKRTARG | V | NGQSG | K | 69–73 | N | K | V | Q | E | D |
EN/GD/SZBA-E1/2017 | PKGKRTARG | V | NGQSG | R | 69–73 | N | K | V | Q | K | D |
CK/JS/KS001-O/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/JS/KS004-O/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/JS/KS008-O/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
DK/JX/ShRSX002-O/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
EN/JX/ShRXZ038/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/JX/ShRGF080-P/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/JX/ShRGF219-O/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/ZJ/HZ142/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/ZJ/HZ293/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | I | Q | E | D |
CK/ZJ/HZ298/2016 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/GD/DGCPLB032/2016 | PKG----RG | V | NGQSG | R | 69–73 | N | K | V | Q | E | D |
CK/LN/LN-083/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | R | A | Q | E | D |
CK/SD/QD2-758/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/SD/QD4-739/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/SD/DZ056/2017 | PKRKRTARG | V | NGQSG | R | 69–73 | N | R | A | Q | E | D |
CK/LN/SY059/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/HB/XT001/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/JS/DT001/2017 | PKG----RG | V | NGLSG | R | 69–73 | N | K | V | Q | E | D |
CK/FJ/NP001/2017 | PKRKRTARG | V | NGQSG | R | 69–73 | N | R | A | Q | E | D |
A total of 35 H7N9 viruses were isolated and sequenced in the present study. CK, chicken; DK, duck; EN, environment; FJ, Fujian; GD, Guangdong; HB, Hebei; JS, Jiangsu; JX, Jiangxi; LN, Liaoning; SD, Shandong; SZ, Shenzhen; YN, Yunnan; ZJ, Zhenjiang.