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. 2018 May 15;19:364. doi: 10.1186/s12864-018-4751-5

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Phylogenetic trees of 1273 core genes present in a single copy in haploid genomes and in two copies in diploid genomes. The trees were clustered by similarity (with minimum normalized Robinson-Foulds at 0.80). Trees from three largest clusters (together representing 76% of all trees) are shown as an overlay (a) and as strict consensus trees (showing only nodes occurring more than 50% of the time) (b). A strict consensus tree for all core genes is shown in panel (c)