Table 4. Intra-protein interactions of the wildtype and mutant proteins.
Proteins | Interactions | DONOR | ACCEPTOR | Parameters | |||||||
Position | Residue | Atom | Position | Residue | Atom | Dd-a | Dh-a | A(d-H-N) | A(a-O=C) | ||
Wild Type | Intra-protein Main Chain-Main Chain Hydrogen Bonds | 299 | S | N | 304 | P | O | 3 | 2.37 | 119.6 | 130.12 |
299 | S | N | 305 | N | O | 2.88 | 1.92 | 157.67 | 135.67 | ||
301 | G | N | 299 | S | O | 2.88 | 2.14 | 130.46 | 100.7 | ||
346 | G | N | 344 | A | O | 3.33 | 3.11 | 93.79 | 76.23 | ||
375 | S | N | 371 | V | O | 2.98 | 2.08 | 148.42 | 154.42 | ||
375 | S | N | 372 | S | O | 3.04 | 2.45 | 117.65 | 123.07 | ||
375 | S | N | 373 | V | O | 3.33 | 3.39 | 77.95 | 78.72 | ||
377 | I | N | 375 | S | O | 3.43 | 3.48 | 79.11 | 76.08 | ||
378 | L | N | 375 | S | O | 3.26 | 2.83 | 106.73 | 112.91 | ||
379 | L | N | 375 | S | O | 2.79 | 1.84 | 156.86 | 162.97 | ||
386 | V | N | 382 | V | O | 2.87 | 1.91 | 166.51 | 161.61 | ||
386 | V | N | 383 | G | O | 3.39 | 2.92 | 110.71 | 112.7 | ||
Mutant | 299 | N | N | 304 | P | O | 2.74 | 1.8 | 154.3 | 151.06 | |
301 | G | N | 299 | N | O | 2.88 | 1.95 | 153.16 | 86.78 | ||
291 | H | N | 312 | M | O | 3.44 | 2.75 | 127.41 | 152 | ||
346 | G | N | 344 | T | O | 3.27 | 3.03 | 95.07 | 75.32 | ||
375 | T | N | 371 | V | O | 2.97 | 2.06 | 150.42 | 157.64 | ||
375 | T | N | 372 | S | O | 3.04 | 2.45 | 117.54 | 123.52 | ||
375 | T | N | 373 | V | O | 3.33 | 3.4 | 77.72 | 78.59 | ||
377 | I | N | 375 | T | O | 3.38 | 3.43 | 79.06 | 77.38 | ||
378 | L | N | 375 | T | O | 3.22 | 2.8 | 106.48 | 115.24 | ||
379 | L | N | 375 | T | O | 2.77 | 1.82 | 158.11 | 165.34 | ||
386 | G | N | 382 | V | O | 2.85 | 1.9 | 159.02 | 158.96 | ||
386 | G | N | 383 | G | O | 3.24 | 2.76 | 110.16 | 112.16 | ||
386 | G | N | 384 | M | O | 3.45 | 3.57 | 75.06 | 76.52 | ||
388 | M | N | 386 | G | O | 3.49 | 3.64 | 73.18 | 75.13 | ||
389 | C | N | 386 | G | O | 3.25 | 2.75 | 111.61 | 110.44 | ||
390 | M | N | 386 | G | O | 2.94 | 1.99 | 161.69 | 161.18 | ||
Wildtype | Intra-protein Main Chain-Side Chain Hydrogen Bonds | 299 | S | OG | 303 | E | O | 2.71 | 9.99 | 999.99 | 170.58 |
312 | T | OG1 | 291 | H | O | 3.28 | 9.99 | 999.99 | 74.22 | ||
375 | S | OG | 371 | V | O | 2.69 | 9.99 | 999.99 | 140.97 | ||
389 | C | N | 386 | V | O | 3.29 | 2.82 | 110.08 | 104.54 | ||
390 | M | N | 386 | V | O | 2.92 | 1.96 | 160.67 | 157.37 | ||
Mutant | 299 | N | ND2 | 303 | E | O | 2.85 | 3.39 | 51.34 | 127.33 | |
299 | N | ND2 | 303 | E | O | 2.85 | 1.87 | 154.41 | 127.33 | ||
299 | N | OD1 | 325 | G | O | 3.48 | 3.99 | 54.4 | 144.62 | ||
299 | N | OD1 | 325 | G | O | 3.48 | 2.41 | 173.85 | 144.62 | ||
301 | G | N | 299 | N | OD1 | 3.46 | 3.33 | 88.94 | 89.1 | ||
375 | T | OG1 | 371 | V | O | 2.65 | 9.99 | 999.99 | 138.55 | ||
Wildtype | Intra-protein Side Chain-Side Chain Hydrogen Bonds | - | |||||||||
Mutant | 299 | N | OD1 | 324 | E | OE1 | 3.42 | 2.51 | 142.92 | 999.99 | |
299 | N | OD1 | 324 | E | OE1 | 3.42 | 3.94 | 54.2 | 999.99 | ||
299 | N | OD1 | 324 | E | OE2 | 3.21 | 2.36 | 135.32 | 999.99 | ||
299 | N | OD1 | 324 | E | OE2 | 3.21 | 4.12 | 27.61 | 999.99 | ||
299 | N | ND2 | 324 | E | OE2 | 2.9 | 1.91 | 156.28 | 999.99 | ||
299 | N | ND2 | 324 | E | OE2 | 2.9 | 3.68 | 36.77 | 999.99 | ||
324 | E | OE1 | 299 | N | OD1 | 3.42 | 3.59 | 72.24 | 999.99 | ||
324 | E | OE1 | 299 | N | OD1 | 3.42 | 3.94 | 53 | 999.99 | ||
324 | E | OE2 | 299 | N | OD1 | 3.21 | 3.39 | 70.97 | 999.99 | ||
324 | E | OE2 | 299 | N | OD1 | 3.21 | 3.58 | 61.21 | 999.99 | ||
324 | E | OE2 | 299 | N | ND2 | 2.9 | 2.58 | 96.37 | 999.99 | ||
324 | E | OE2 | 299 | N | ND2 | 2.9 | 3.03 | 73.2 | 999.99 |