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. 2018 Apr 30;54(3):240–252. doi: 10.1007/s11627-018-9905-2

Table 1.

Genetic components used to construct expression cassettes within the T-DNAs

Component type Label Description References
Promoters Ubi pro The maize ubiquitin promoter, the 5′ UTR, and the first intron Christensen et al. (1992)
Sb-ALS pro The sorghum ALS promoter SB-ALS promoter and 5′ UTR, DOE-JGI Sbi v3.1, SBChr04, bases 49239164-49240031. DOE-JGI Sbi v3.1 corresponds to Sorghum bicolor BTx623 assembly v3.0.1 and gene annotation v3.1 available from phytozome (http://phytozome.jgi.doe.gov/). Chromosome 4 of Sbi v3.1 is registered as NCBI accessions NC_012873.2 and CM000763.3
PLTPpro Maize phospholipid transferase promoter Anand et al. (2017a, b) US20170121722
LTP2pro Barley lipid transferase promoter Kalla et al. (1994)
nos pro The Agrobacterium-derived nopaline synthase promoter An (1986)
Axig1pro The maize Axig1 promoter Garnaat et al. (2002) WO2002006499
rab17 pro The maize rab17 promoter and 5’ UTR Busk et al. (1997)
3′ Sequences PINII The potato proteinase inhibitor II (pinII) 3′ sequence An et al. (1989)
Sb-PEPC 3′ The PepCarboxylase 3′ regulatory sequence from Sorghum bicolor Anand et al. (2017a, b) US20170121722
Os-T28 3’ The T28 3′ regulatory sequence from Oryza sativa Bhyri et al. (2014) US20140130205 A1
Marker genes PMI The phosphomannose isomerase gene from E. coli Negrotto et al. (2000)
HRA The maize ALS double mutant gene conferring herbicide resistance Green et al. 2009
moPAT A maize codon-optimized gene encoding phosphinothricin acetyltransferase Jayne et al. (2000) US6096947
ZsYELLOW The ZsYellow1 N1 gene encoding a yellow fluorescent protein from Zoanthus sp. Matz et al. (1999)
ZsGREEN A gene encoding the ZsGREEN protein from Zoanthus sp. Matz et al. (1999)
Maize morphogenic genes Zm-Wus2 The maize Wuschel2 (Wus2) gene Lowe et al. (2007) US7256322B2
Zm-Bbm The maize Baby boom gene (Bbm) Gordon-Kamm et al. (2005) WO2005075655