Fig. 6.

Identification of recombination hotpots in HV-1 genome. Recombination hotspots are shown in dark orange and cold spots in blue across the 3′ half genome. Position numbering is relative to HXB2. Each line represents a position, and the thickness of the colored regions represents consecutive positions. The sequences from the last time point (day 432) in CH0654 were excluded from the analysis due to the initiation of ART at day 112