Table 2.

Precision and recall of our method MSA _chic compared to GATK

Measure	GATK	20	50	100
SNV precision	0.992161	0.998585	0.998863	0.998773
SNV recall	0.904897	0.997098	0.998695	0.999072
Indel precision	0.364853	0.996514	0.99731	0.997778
Indel recall	0.0624981	0.982659	0.985723	0.985958