Skip to main content
. 2017 Jun 30;9(1):99–109. doi: 10.1080/21505594.2017.1339008

Table 2.

Primers used in gene expression analysis of selected genes of D. citri by real time RT-PCRa.

Gene NCBI Reference Sequence   Primer (Forward and Reverse) TM (˚C) Product size (bp)
DcTPS -1 XM_017448460.1 F AGTCATTATCCAGGGCAACG 59.96 198
    R CAGAAGGTGCCATTACAGCA 59.86  
DcTPS -2 XM_008470475.1 F CCTACATCCGGATTGACCAG 60.33 192
    R CGTACAGTTGGCGAATTCCT 60.13  
DcTREH -1 XM_008470849.1 F GGTAATGGAGGCGAGTACGA 60.10 190
    R ACAGGAACAGGATGCCTCAC 60.12  
DcTREH -2 XM_008470850.2 F TCACCTCCAACCCGAGTATC 59.93 191
    R CAGTTCTCGAAACCGTCCTC 59.84  
DcTREH -3 XM_008476679.2 F CTGAAGTGTGTGCTCCGAAA 60.02 197
    R GAGTCGGGAAACAGTGAAGC 59.85  
DcTREH -4 XM_008476680.2 F TGCAGTTCAGATGGCTTCAC 59.99 198
    R GGCGACCAGTCTTCAAACTC 59.85  
DcTREH -5 XM_008476684.2 F GCAGTGGGACTACCCTAACG 59.62 195
    R CCGTGTCCTCCTGGTACTGT 60.03  
DcER -1b XM_008489926.2 F GAGAGGTGAAACAGGCGGTA 60.25 200
    R TGCAGGTTTCACGAGATCAG 59.98  
DcTKT -1 XM_008486923.2 F CCACGCACAGAGACATCATT 59.71 201
    R CGGTGGTCGGTACAGATTTT 59.85  
DcTKT -2 XM_008471702.2 F CCAGATCCGTATGGGAGCTA 60.05 201
    R CCTGGGATTGTACGGAACAT 59.67  
DcMPI XM_008474470.2 F CCAGAATTGGCCATAGCACT 60.10 199
    R GAGCTTGGGGAGCACTCATA 60.36  
DcHK XM_008477526.2 F AAGGATAGACCGGGATGACA 59.36 199
    R CTGGAAAGCGCCTAGTTTCA 60.51  
DcHK2 -1 XM_008480214.1 F GCGAGCTGGTTCGTGTAGTA 59.10 200
    R ATCCACCGCTATGGTGATGT 60.23  
DcHK2 -2 XM_017444207.1 F CTAGCCGGCCTAGGATTACC 60.08 202
    R TCATCAGGTCATGGAAGTGC 59.64  
DcProDH XM_017446986.1 F GAAGGTGACCAAGGATGCTC 59.66 199
    R TCGGACCAGGGTGTTTAGTC 59.97  
DcCS XM_008470046.1 F TGCCCGATGACTCCTTATTC 60.04 190
    R CCAAGAGCTCTGGACACTCC 59.99  
DcPC XM_008478621.1 F GAAGCTTTGGCTTCATTTGG 59.82 201
    R GTCGCGGACACTTACACTCA 59.90  
DcSHMT XM_008473310.2 F TCGAACCTCATGGGAGAATC 60.01 197
    R TCCTTTGTGAGTGGTGGTCA 60.13  
DcPSPH-1 XM_008483178.2 F GGCCAAAGTCATCGAGAGTC 59.81 202
    R GACCACGTTGCCTCCATAAC 60.38  
DcPSPH-2 XM_008472446.2 F TGAACCCGGAGCAGATATTC 60.04 209
    R ACTCAGGCTCGGCTTCATAA 59.98  
α-Tubulinc XM_008482608.2 F CTTTCCAACACCACCGCTAT 59.99 196
    R CTCCTTCTCCAGCCTCCTCT 60.09  
Actinc XM_008470468.2 F TATCCCAGCCCTGAGCTAGA 59.93 204
    R CACCATGACACCCTGATGAC 59.80  
a

The listed genes were selected depending on the affected cycles (increase or decrease in its compounds). Furthermore, these genes were assembled based on recent available data in national center for biotechnology information website (NCBI, http://www.ncbi.nlm.nih.gov/gene/).

b

DcER gene has been matched as Diaphorina citri aldose reductase-like (DcAR) using the protein-protein BLAST, based on recent available data in national center for biotechnology information website (NCBI, http://www.ncbi.nlm.nih.gov/gene/).

c

Genes have been used as a reference genes for data normalization according to Tiwari et al., 201148 and Killiny et al., 201449

Abbreviations:

DcTPS-1: Diaphorina citri-α, α Trehalose phosphate synthase;

DcTPS-2: Diaphorina citri-Trehalose phosphate synthase-like;

DcTREH: Diaphorina citri-Trehalase;

DcER: Diaphorina citri-Erythrose reductase;

DcTKT: Diaphorina citri-Transketolase-like;

DcMPI: Diaphorina citri-Mannose-6-phosphate isomerase;

DcHK: Diaphorina citri-Hexokinase-like;

DcHK2: Diaphorina citri-Hexokinase-2-like;

DcProDH: Diaphorina citri-proline dehydrogenase 1;

DcCS: Diaphorina citri-probable citrate synthase 2;

DcPC: Diaphorina citri-pyruvate carboxylase, mitochondrial-like;

DcSHMT: Diaphorina citri-serine hydroxymethyltransferase, cytosolic;

DcPSPH: Diaphorina citri-phosphoserine phosphatase-like