Table 2.
Gene | NCBI Reference Sequence | Primer (Forward and Reverse) | TM (˚C) | Product size (bp) | |
---|---|---|---|---|---|
DcTPS -1 | XM_017448460.1 | F | AGTCATTATCCAGGGCAACG | 59.96 | 198 |
R | CAGAAGGTGCCATTACAGCA | 59.86 | |||
DcTPS -2 | XM_008470475.1 | F | CCTACATCCGGATTGACCAG | 60.33 | 192 |
R | CGTACAGTTGGCGAATTCCT | 60.13 | |||
DcTREH -1 | XM_008470849.1 | F | GGTAATGGAGGCGAGTACGA | 60.10 | 190 |
R | ACAGGAACAGGATGCCTCAC | 60.12 | |||
DcTREH -2 | XM_008470850.2 | F | TCACCTCCAACCCGAGTATC | 59.93 | 191 |
R | CAGTTCTCGAAACCGTCCTC | 59.84 | |||
DcTREH -3 | XM_008476679.2 | F | CTGAAGTGTGTGCTCCGAAA | 60.02 | 197 |
R | GAGTCGGGAAACAGTGAAGC | 59.85 | |||
DcTREH -4 | XM_008476680.2 | F | TGCAGTTCAGATGGCTTCAC | 59.99 | 198 |
R | GGCGACCAGTCTTCAAACTC | 59.85 | |||
DcTREH -5 | XM_008476684.2 | F | GCAGTGGGACTACCCTAACG | 59.62 | 195 |
R | CCGTGTCCTCCTGGTACTGT | 60.03 | |||
DcER -1b | XM_008489926.2 | F | GAGAGGTGAAACAGGCGGTA | 60.25 | 200 |
R | TGCAGGTTTCACGAGATCAG | 59.98 | |||
DcTKT -1 | XM_008486923.2 | F | CCACGCACAGAGACATCATT | 59.71 | 201 |
R | CGGTGGTCGGTACAGATTTT | 59.85 | |||
DcTKT -2 | XM_008471702.2 | F | CCAGATCCGTATGGGAGCTA | 60.05 | 201 |
R | CCTGGGATTGTACGGAACAT | 59.67 | |||
DcMPI | XM_008474470.2 | F | CCAGAATTGGCCATAGCACT | 60.10 | 199 |
R | GAGCTTGGGGAGCACTCATA | 60.36 | |||
DcHK | XM_008477526.2 | F | AAGGATAGACCGGGATGACA | 59.36 | 199 |
R | CTGGAAAGCGCCTAGTTTCA | 60.51 | |||
DcHK2 -1 | XM_008480214.1 | F | GCGAGCTGGTTCGTGTAGTA | 59.10 | 200 |
R | ATCCACCGCTATGGTGATGT | 60.23 | |||
DcHK2 -2 | XM_017444207.1 | F | CTAGCCGGCCTAGGATTACC | 60.08 | 202 |
R | TCATCAGGTCATGGAAGTGC | 59.64 | |||
DcProDH | XM_017446986.1 | F | GAAGGTGACCAAGGATGCTC | 59.66 | 199 |
R | TCGGACCAGGGTGTTTAGTC | 59.97 | |||
DcCS | XM_008470046.1 | F | TGCCCGATGACTCCTTATTC | 60.04 | 190 |
R | CCAAGAGCTCTGGACACTCC | 59.99 | |||
DcPC | XM_008478621.1 | F | GAAGCTTTGGCTTCATTTGG | 59.82 | 201 |
R | GTCGCGGACACTTACACTCA | 59.90 | |||
DcSHMT | XM_008473310.2 | F | TCGAACCTCATGGGAGAATC | 60.01 | 197 |
R | TCCTTTGTGAGTGGTGGTCA | 60.13 | |||
DcPSPH-1 | XM_008483178.2 | F | GGCCAAAGTCATCGAGAGTC | 59.81 | 202 |
R | GACCACGTTGCCTCCATAAC | 60.38 | |||
DcPSPH-2 | XM_008472446.2 | F | TGAACCCGGAGCAGATATTC | 60.04 | 209 |
R | ACTCAGGCTCGGCTTCATAA | 59.98 | |||
α-Tubulinc | XM_008482608.2 | F | CTTTCCAACACCACCGCTAT | 59.99 | 196 |
R | CTCCTTCTCCAGCCTCCTCT | 60.09 | |||
Actinc | XM_008470468.2 | F | TATCCCAGCCCTGAGCTAGA | 59.93 | 204 |
R | CACCATGACACCCTGATGAC | 59.80 |
The listed genes were selected depending on the affected cycles (increase or decrease in its compounds). Furthermore, these genes were assembled based on recent available data in national center for biotechnology information website (NCBI, http://www.ncbi.nlm.nih.gov/gene/).
DcER gene has been matched as Diaphorina citri aldose reductase-like (DcAR) using the protein-protein BLAST, based on recent available data in national center for biotechnology information website (NCBI, http://www.ncbi.nlm.nih.gov/gene/).
Genes have been used as a reference genes for data normalization according to Tiwari et al., 201148 and Killiny et al., 201449
Abbreviations:
DcTPS-1: Diaphorina citri-α, α Trehalose phosphate synthase;
DcTPS-2: Diaphorina citri-Trehalose phosphate synthase-like;
DcTREH: Diaphorina citri-Trehalase;
DcER: Diaphorina citri-Erythrose reductase;
DcTKT: Diaphorina citri-Transketolase-like;
DcMPI: Diaphorina citri-Mannose-6-phosphate isomerase;
DcHK: Diaphorina citri-Hexokinase-like;
DcHK2: Diaphorina citri-Hexokinase-2-like;
DcProDH: Diaphorina citri-proline dehydrogenase 1;
DcCS: Diaphorina citri-probable citrate synthase 2;
DcPC: Diaphorina citri-pyruvate carboxylase, mitochondrial-like;
DcSHMT: Diaphorina citri-serine hydroxymethyltransferase, cytosolic;
DcPSPH: Diaphorina citri-phosphoserine phosphatase-like