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. Author manuscript; available in PMC: 2019 May 15.
Published in final edited form as: Cancer Res. 2018 Mar 16;78(10):2463–2474. doi: 10.1158/0008-5472.CAN-17-1724

Figure 4. Expression and methylation across chromatin states in the model.

Figure 4

(A) Average expression of genes closest to each of the four states displayed in Fig. 3A. Normalized FPKM counts across all tumors were derived from cuffnorm.

(B) Average methylation across each of the states in Fig. 3A. Fractional methylation levels were derived from WGBS data in GBM and intersected with our data using bedtools intersect.