Figure 4. Expression and methylation across chromatin states in the model.
(A) Average expression of genes closest to each of the four states displayed in Fig. 3A. Normalized FPKM counts across all tumors were derived from cuffnorm.
(B) Average methylation across each of the states in Fig. 3A. Fractional methylation levels were derived from WGBS data in GBM and intersected with our data using bedtools intersect.