Table 3.
List of top 50 up-regulated genes in PBMCs of Sahiwal cows (FDR < 0.05, Fold change ≥2).
| Oligio ID | Gene Symbol | p (Corr) | Fc (abs) | Log Fc | Description |
|---|---|---|---|---|---|
| A_73_P492178 | eEF1A1 | 0.0033 | 84.96 | 6.41 | Elongation factor 1-alpha 1 - Homo sapiens |
| A_73_P042021 | GRO1 | 6.77E-04 | 53.93 | 5.75 | chemokine (C-X-C motif) ligand 1 |
| A_73_114724 | CXCL2 | 0.0035 | 42.50 | 5.41 | chemokine (C-X-C motif) ligand 2 |
| A_73_P490513 | LOC613345 | 1.48E-04 | 38.71 | 5.27 | H3 histone, family 3A-like |
| A_73_P093746 | CSF3R | 0.0020 | 38.13 | 5.25 | Colony stimulating factor 3 receptor |
| A_73_P054346 | DEFB3 | 6.02E-04 | 30.42 | 4.93 | Defensin beta 3 |
| A_73_108688 | CXCL3 | 0.0128 | 29.06 | 4.86 | chemokine (C-X-C motif) ligand 2 |
| A_73_P042156 | NSMCE4A | 3.00E-06 | 28.26 | 4.82 | Non-SMC element 4 homolog A (S. Cerevisiae) |
| A_73_112587 | TGFBI | 0.0021 | 26.79 | 4.74 | Transforming growth factor, beta-induced |
| A_73_118124 | BOLA-DQA3 | 0.0034 | 23.13 | 4.53 | Major histocompatibility complex, class II, DQ alpha, type 3 |
| A_73_P091851 | LOC786131 | 1.11E-05 | 22.61 | 4.50 | Ribosomal protein L17-like |
| A_73_106226 | BTK | 8.78E-04 | 22.48 | 4.49 | Bruton agammaglobulinemia tyrosine kinase |
| A_73_P112801 | SMIM4 | 1.64E-04 | 22.08 | 4.46 | Small integral membrane protein 4 |
| A_73_121452 | DNAJC2 | 1.35E-05 | 21.66 | 4.44 | Dnaj (Hsp40) homolog, subfamily C, member 2 |
| A_73_P095766 | URB1 | 2.07E-05 | 21.26 | 4.41 | URB1 ribosome biogenesis 1 homolog (S. Cerevisiae) |
| A_73_102402 | ICAM3 | 0.0089 | 19.81 | 4.31 | Intercellular adhesion molecule 3 |
| A_73_100827 | MARVELD1 | 4.24E-05 | 19.08 | 4.25 | MARVEL domain containing 1 |
| A_73_P050621 | TIMM8B | 7.17E-07 | 19.01 | 4.25 | Translocase of inner mitochondrial membrane 8 homolog B |
| A_73_P461976 | MYC | 7.63E-04 | 17.96 | 4.17 | V-myc myelocytomatosis viral oncogene homolog |
| A_73_P102796 | CCL4 | 0.0319 | 17.58 | 4.14 | chemokine (C-C motif) ligand 4 |
| A_73_115248 | SURF6 | 1.09E-06 | 17.28 | 4.11 | Surfeit 6 |
| A_73_110287 | SFT2D1 | 0.0014 | 17.20 | 4.10 | SFT2 domain containing 1 |
| A_73_112071 | C25H16orf59 | 0.0055 | 17.15 | 4.10 | Chromosome 25 open reading frame, human |
| A_73_P045161 | YTHDF2 | 5.99E-05 | 16.98 | 4.09 | YTH domain family, member 2 |
| A_73_P250966 | SLC46A2 | 5.89E-05 | 16.77 | 4.07 | Solute carrier family 46, member 2 |
| A_73_101963 | BNIP3L | 0.0067 | 15.53 | 3.96 | BCL2/adenovirus E1B 19kda interacting protein 3-like |
| A_73_P335761 | DDX47 | 2.10E-04 | 15.46 | 3.95 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 |
| A_73_115219 | ARHGEF3 | 0.0021 | 14.82 | 3.89 | Rho guanine nucleotide exchange factor |
| A_73_P255701 | ELAC1 | 3.11E-05 | 14.74 | 3.88 | Elac homolog 1 (E. Coli) |
| A_73_104190 | HP | 2.76E-04 | 14.67 | 3.87 | Haptoglobin |
| A_73_117230 | GPR37L1 | 2.63E-05 | 14.62 | 3.87 | G protein-coupled receptor 37 like 1 |
| A_73_P435496 | SDE2 | 8.44E-05 | 14.14 | 3.82 | SDE2 telomere maintenance homolog |
| A_73_P122936 | CALM | 1.40E-04 | 14.10 | 3.82 | Calmodulin-like |
| A_73_112287 | SLBP | 0.008642 | 14.00 | 3.81 | Stem-loop binding protein |
| A_73_109126 | MITD1 | 9.44E-07 | 13.99 | 3.81 | Microtubule interacting and transport, domain containing 1 |
| A_73_P064756 | CCL16 | 0.0046 | 13.90 | 3.80 | chemokine (C-C motif) ligand 16 |
| A_73_P044251 | NDRG1 | 0.0159 | 13.79 | 3.79 | N-myc downstream regulated 1 |
| A_73_P312076 | RNF149 | 0.0025 | 13.78 | 3.78 | Ring finger protein 149 |
| A_73_P119681 | SAT1 | 0.0012 | 13.62 | 3.77 | Spermidine/spermine N1-acetyltransferase 1 |
| A_73_117315 | RTF1 | 0.0022 | 13.46 | 3.75 | Rtf1, Paf1/RNA polymerase II complex component, homolog |
| A_73_P043126 | CHCHD4 | 0.003424 | 13.39 | 3.74 | Coiled-coil-helix-coiled-coil-helix domain containing 4 |
| A_73_117804 | COX17 | 0.0091 | 13.35 | 3.74 | COX17 cytochrome c oxidase assembly homolog (S. Cerevisiae |
| A_73_105727 | FAS | 7.21E-04 | 13.24 | 3.73 | Fas (TNF receptor superfamily, member 6) |
| A_73_P030531 | ALKBH7 | 0.0056 | 13.10 | 3.71 | Alkb, alkylation repair homolog 7 (E. Coli |
| A_73_P089166 | LOC101909443 | 7.41E-04 | 12.75 | 3.67 | PREDICTED dynein light chain 1, cytoplasmic-like |
| A_73_100589 | IRF5 | 2.49E-04 | 12.68 | 3.66 | Interferon regulatory factor 5 |
| A_73_P087251 | SEC24B | 1.23E-07 | 12.63 | 3.66 | SEC24 family member B |
| A_73_P054601 | HEATR1 | 0.0010 | 12.61 | 3.66 | HEAT repeat containing protein 1 |
| A_73_P037801 | LOC515418 | 0.012048 | 12.57 | 3.65 | CD1a molecule-like |
| A_73_114567 | GNL2 | 0.002198 | 12.27 | 3.62 | Guanine nucleotide binding protein-like 2 (nucleolar) |