Table 2.

Nucleotide sequence polymorphism of open reading frames and recombinantly expressed fragments, in cattle and buffalo derived T. parva isolates. SNPs expressed as percentage of DNA sequence length for the whole gene (WG) sequence and the recombinantly expressed fragment (EF).

Isolate	TpMuguga_01g00095		TpMuguga_ 01g00575		TpMuguga_ 01g00876		TpMuguga_ 01g00939		TpMuguga_01g00972		TpMuguga_ 04g00437
	WG	EF	WG	EF	WG	EF	WG	EF	WG	EF	WG	EF
ChitongoZ2	0	0	5.7	0.3	0	0	2.3	0.3	0.5	0	1.5	0
Entebbe	0	0	4.1	0.3	0	0	2.1	0.3	0.4	0	0.7	0
KateteB2	0	0	5.5	0.3	0.8	0	2.3	0.3	0.5	0	1.1	0
Katumba	0	0	6.0	1.9	2.6	0.4	2.6	1.6	0.5	0	0.8	0
Kiambu5	0	0	23.5	2.5	7.1	1.1	3.0	1.6	0.5	0	1.8	0
KiambuZ464/C12	0	0	7.6	2.5	2.6	1.1	2.7	1.6	0.5	0	1.5	0
MandaliZ22	0	0	4.4	0.3	0	0	2.1	0.3	0.4	0	0.6	0
Marikebuni	0	0	3.8	0.3	5.8	1.1	0.1	0.3	0.1	0	1.7	0
MugMar	0	0	3.7	0.3	6.1	1.1	0.1	0.3	0.1	0	1.7	0
MugUg	0	0	5.9	0.3	0.3	0	2.4	0.3	0.6	0	1.7	0
Muguga2*	0	0	0	0	0	0	0	0	0	0	0	0
Nyakizu	0.1	0	0.7	0.3	5.0	1.1	2.9	1.6	0.5	0	1.2	0
Serengeti	0	0	0	0	0	0	0	0	0	0	0	0
Uganda	0	0	5.9	0.3	0.3	0	2.4	0.3	0.6	0	1.7	0
Buffalo LAWR**	2.0	1.2	6.1	0.3	3.2	0.4	2.0	1.1	1.4	1.9	2.8	0.6
Buffalo Z5E5**	2.1	0.9	7.7	0.8	1.9	0.7	2.0	0.8	1.0	1.6	3.0	0.6

The isolates shown include cattle derived and two buffalo derived isolates (**) and a clone of the reference genome isolate (*).