Skip to main content
. Author manuscript; available in PMC: 2018 May 17.
Published in final edited form as: Cell Rep. 2018 May 1;23(5):1399–1408. doi: 10.1016/j.celrep.2018.04.024

Table 1.

Global Accuracy Metric Percentile Scores of VGIC VSD X-Ray Structures as Provided by the PDB

PDB Code Resolution (Å) R-Free Clash Score Ramachandran Outliers Side-Chain Outliers RSRZ Outliers
3LUT 2.9 0.222 23 2.50% 6.80% 20.30%
3RVY 2.7 0.289 32 0.20% 4.20% 5%
4DXW 3.05 0.261 35 5.40% 16.10% 1.60%
4MS2 2.75 0.25 16 0.50% 8.20% 2.90%
5VB2 3.2 0.27 6 0.00% 3.10% 2.10%

This table contains the global percentile scores of the data and model accuracy of VGIC crystal structures containing the VSD, as listed in the summary report of the database. The data quality validation metrics include free R-factor (R-Free) and Clash Score and Ramachandran, side-chain, and real-space R-value Z-score (RSRZ) outliers as reported for each selected example structure in the Structure Summary section of the database. See also Figures 1 and 2.