Table 2.
Resource | Description | References |
---|---|---|
TumorHoPe | Tumor-homing peptide database | Kapoor et al144 |
Brainpep | Blood–brain barrier peptide database | Volpe145 |
SARvision | Peptide bioinformatics | Hansen et al75 |
PEP-FOLD | Peptide structure prediction | Thevenet et al81 |
PepX | Unique protein–peptide structural clusters | Vanhee et al146 |
PepBind | PDB-derived protein–peptide structures | Das et al89 |
PeptiDB | Survey of protein–peptide interactions | London et al90 |
FlexPepDock | Protein–peptide docking | London et al147 |
AnchorDock | Protein–peptide docking | Ben-Shimon and Niv104 |
HADDOCK | Protein–peptide docking | Trellet et al105 |
CABS-dock | Protein–peptide docking | Kurcinski et al106 |
GalaxyPepDock | Protein–peptide docking | Lee et al107 |
DocScheme | Protein–peptide docking | Niv and Weinstein98 |
DynaDock | Protein–peptide docking | Antes99 |
Pepspec | Protein–peptide docking | King and Bradley100 |
PepCrawler | Protein–peptide docking | Donsky and Wolfson101 |
pDOCK | Protein–peptide docking | Khan and Ranganathan148 |
ACCLUSTER | Peptide-binding site prediction | Yan and Zou149 |
ACCLUSTER+BriX | Peptide-binding site prediction | Verschueren et al150 |
PEP-SiteFinder | Peptide-binding site prediction | Saladin et al151 |
VitAL | De novo peptide design | Unal et al152 |
Abbreviation: PDB, Protein Data Bank.