Table 2. Alignment and SNP statistics of sequenced isolates using H99 as a reference.
| Strain | MLST genotype | % of Assembly Covered by aligned reads | Alignment depth (X) | SNPs |
|---|---|---|---|---|
| AD3-55a | unique | 100 | 133 | 28,070 |
| AD2-06a | unique | 100 | 129 | 28,202 |
| AD2-07 | unique | 99 | 45 | 27,797 |
| AD3-41a | unique | 100 | 134 | 25,378 |
| AD4-92a | A3/M3 | 100 | 132 | 11,906 |
| AD4-47a | A4/M1 | 100 | 132 | 10,018 |
| AD3-58 | A4/M1 | 100 | 123 | 9,996 |
| AD3-83a | A1/M1 | 100 | 166 | 172 |
| AD2-99a | A1/M1 | 100 | 119 | 180 |
| AD6-55a | related to A1/M1 | 100 | 108 | 12,440 |
| AD6-54a | related to A1/M1 | 100 | 131 | 12,440 |
| AD5-45a | related to A1/M1 | 100 | 142 | 12,417 |
| AD1-95a | related to A1/M1 | 100 | 107 | 12,521 |
| AD1-90a | related to A1/M1 | 100 | 122 | 12,511 |
| AD5-67a | VNII | 100 | 139 | 277,381 |
| AD3-9a | VNII | 100 | 111 | 277,417 |
| AD3-11a | VNII | 100 | 125 | 268,842 |
| AD4-76a | Th | 100 | 112 | 43,281 |
| AD3-95a | Th | 100 | 141 | 43,235 |
| AD5-53a | A5/M5 | 100 | 130 | 42,291 |
| AD2-82a | A5/M5 | 100 | 133 | 42,271 |
| AD1-86a | A5/M5 | 100 | 105 | 43,778 |
| AD5-39a | A4/M4 | 100 | 108 | 43,696 |
| AD4-63a | A4/M4 | 100 | 129 | 43,736 |
| AD2-04a | A4/M4 | 100 | 137 | 43,733 |
| AD1-68a | A4/M4 | 100 | 132 | 43,778 |