Table 4.

CNVRs extracted from penile cancer data set using they query-based model with the $Q_{\text{loss}}^{\ast }$ query

				HPV-positive		HPV-negative
Chr	Start	End	Q-value	Gain (%)	Loss (%)	Gain (%)	Loss (%)
2	233245552	234392866	0.0382	0	35.7	0	3.7
2	237307836	238138001	0.0473	0-7.14	35.7	0	3.7

Searching for regions with a copy number loss in at least 30% of cases and any kind of variation in at most 5% of controls. Columns 5 and 6 show the frequency of copy number gain and loss for the case group, and columns 7 and 8 shows the frequency of gain and loss for the control group