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. 2018 May 18;4(1):vey007. doi: 10.1093/ve/vey007

Figure 6.

Figure 6.

Coverage over the genome following different mapping strategies. The line marked ‘shiver’ is for mapping to the reference constructed for the sample using contigs, with smalt. The other lines are for mapping to the closest identified real reference using the indicated mapping algorithm. (A) is the same sample shown in Fig. 5; (B) is Miseq sample ERR732071, a more extreme example of mapping failure using the closest real reference.