Table 1.

Statistics of sequencing, de novo assembly, and annotation of nuclear genomes.

Strain	I-30	I-329	I-566
Coverage by Illumina HiSeq-2500	264X	234X	219X
Number of Illumina reads (after filtration)	14,051,242	13,236,656	13,682,586
Average length of Illumina reads, nt	218	205	184
Coverage by PacBio RSII	59X	60X	–
Number of PacBio reads	122,857	191,070	–
Average length of PacBio reads, nt	5,596	3,655	–
Total contigs	155	71	562
Number of contigs larger than 500 bp	80	45	443
Contig N50, bp	470,360	511,336	58,253
Largest contig, bp	870,688	1,035,721	252,238
Total assembly length, bp	11,587,783	11,587,876	11,502,012
Predicted protein-coding genes	5,323	5,323	5,290
Predicted tRNA genes	285	288	284
Ty elements	472	474	594