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. 2018 May 21;19:371. doi: 10.1186/s12864-018-4708-8

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Permutation analysis with shuffled hybrid trait values with SNP, transcriptome (mRNA), or sRNA data. The lowest p-values of each permutation run (black violin plot) and of the actual genotype-trait allocation (red dot) are represented. The dotted line indicates the threshold to reach significance at 5% FDR