Table 1. Selected cases for WES and WTS analysis: demographic characteristics of the patient population at the time of diagnosis, and molecular characterization of the glioblastoma tumors.
RFS Month |
RFS ID |
ID Sample |
Age | Sex | Tumor Size (cm2) |
Brain Region |
EGFR | EGFRvIII | MGMT | IDH1/2 | RNAseq (WTS) |
Exome Seq (WES) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | S | A | 58 | F | 70 | Frontal | AMPL | Trunc. | MET | WT | X | X |
3 | S | B | 60 | F | 52 | Parietal | Not AMPL | WT | UNMET | WT | X | X |
3 | S | C | 58 | F | 33 | Right- temporal |
AMPL | WT | MET | WT | X | X |
5 | S | D | 62 | M | 7 | Right-insula | Not AMPL | WT | UNMET | WT | X | |
5 | S | E | 70 | M | 28 | Left-prerolandic (frontal) |
Not AMPL | WT | MET | WT | X | X |
5 | S | F | 58 | F | 146 | Right frontal |
Not AMPL | WT | UNMET | WT | X | |
16 | M | G | 58 | M | 90 | ND | AMPL | WT | MET | WT | X | |
18 | M | H | 56 | M | 13 | ND | Not AMPL | WT | UNMET | WT | X | |
23 | M | I | 60 | F | 48 | Basal temporal lobe |
AMPL | Trunc. | MET | WT | X | |
25 | L | J | 61 | M | 17 | ND | Not AMPL | WT | UNMET | WT | X | X |
30 | L | K | 57 | F | 33 | Frontal | AMPL | WT | MET | WT | X | X |
32 | L | L | 44 | F | 3 | Frontal | AMPL | Trunc. | MET | WT | X | X |
42 | L | M | 50 | F | 16 | ND | ND | WT | UNMET | WT | X | X |
RFS, recurrence-free survival; S, short group; M, medium group; L, long group; letters from A to M represents each ID samples; WES, whole exome sequencing; WTS, whole transcriptome sequencing; EGFR, epidermal growth factor receptor; EGFRvIII, EGFR variant III; MGMT, O(6)methylguanine-DNA methyltransferase; IDH1, isocitrate dehydrogenase1; MET, methylation; UNMET, no methylation; Trunc, presence of truncated form; AMPL, amplified; WT, wildtype; ND, not determined.