Table 12.
Differentially expressed lncRNAs in cirrhosis vs healthy patient’s tissue samples (FDR < 0.05).
| lncRNA ID | Chromosome | Fold change | FDR |
|---|---|---|---|
| lnc-C21orf67-10:1 | 21 | 23661.18 | 1.25E-09 |
| lnc-CRK-3:2 | 17 | 19137.71 | 4.54E-08 |
| lnc-FBXO11-7:1 | 2 | 5354.15 | 1.25E-09 |
| lnc-GCNT1-4:6 | 9 | 382.70 | 4.77E-08 |
| lnc-GCNT1-4:5 | 9 | 320.01 | 8.81E-07 |
| lnc-GCNT1-4:2 | 9 | 284.32 | 5.92E-05 |
| lnc-GCNT1-4:3 | 9 | 284.07 | 4.24E-05 |
| lnc-GCNT1-4:4 | 9 | 278.80 | 8.29E-05 |
| HAGLR:1 | 2 | 259.55 | 2.06E-06 |
| HAGLR:31 | 2 | 259.36 | 2.06E-06 |
| lnc-ADCY10-1:1 | 1 | 199.46 | 3.12E-06 |
| lnc-UBC-3:1 | 12 | 146.21 | 8.81E-07 |
| lnc-TRIM27-18:1 | 6 | 68.97 | 7.70E-04 |
| lnc-AC106017.1.1-2:1 | 17 | 52.61 | 1.30E-09 |
| lnc-FNBP1L-2:1 | 1 | 36.38 | 3.18E-05 |
| lnc-FCGR3A-3:1 | 1 | 30.45 | 3.64E-08 |
| lnc-ZNF391-5:2 | 6 | 26.39 | 2.34E-07 |
| lnc-AC102948.1.1-4:1 | 17 | 25.97 | 3.76E-07 |
| lnc-ECHDC1-1:1 | 6 | 16.78 | 4.18E-04 |
| lnc-MAP1LC3B-7:1 | 16 | 16.24 | 4.41E-06 |
| lnc-PRRC2C-5:1 | 1 | 15.40 | 5.83E-05 |
| lnc-C6orf100-12:1 | 6 | 15.25 | 9.73E-06 |
| LIMD1-AS1:6 | 3 | 14.15 | 1.96E-05 |
| lnc-GNGT2-1:2 | 17 | 14.13 | 5.72E-04 |
| lnc-GPR39-7:2 | 2 | 11.30 | 1.17E-02 |
| SNHG1:34 | 11 | 8.88 | 5.63E-05 |
| lnc-TMPO-1:1 | 12 | 6.71 | 4.40E-03 |
| lnc-HIST1H2BI-2:2 | 6 | 6.70 | 8.37E-04 |
| lnc-NARF-2:2 | 17 | 6.53 | 7.74E-04 |
| lnc-SAG-4:1 | 2 | 6.35 | 6.94E-03 |
| lnc-TRIM7-2:5 | 5 | 5.95 | 7.95E-03 |
| lnc-PARVG-4:1 | 22 | 4.65 | 1.98E-03 |
| MIR22HG:35 | 17 | 4.37 | 4.94E-02 |
| MIR22HG:18 | 17 | 4.37 | 4.94E-02 |
| MIR22HG:24 | 17 | 4.32 | 4.77E-02 |
| lnc-GRAP-1:1 | 17 | 4.27 | 4.96E-04 |
| lnc-AC007952.2.1-2:1 | 17 | 4.26 | 5.31E-04 |
| MIR22HG:47 | 17 | 4.25 | 4.87E-02 |
| lnc-AC007952.1.1-3:1 | 17 | 4.21 | 4.04E-04 |
| lnc-AC007952.2-2:3 | 17 | 4.16 | 4.51E-04 |
| lnc-AC007952.2-2:1 | 17 | 4.14 | 4.59E-04 |
| lnc-METTL12-1:2 | 11 | 1.97 | 3.70E-02 |
| DLEU2:20 | 13 | −1.17 | 4.93E-02 |
| GAS5:42 | 1 | −1.31 | 3.12E-02 |
| GAS5:83 | 1 | −1.32 | 3.08E-02 |
| lnc-GPC3-1:1 | X | −1.49 | 2.81E-02 |
| lnc-AC027763.2.1-1:2 | 17 | −1.56 | 2.42E-02 |
| lnc-ZFAT-1:6 | 8 | −1.57 | 4.35E-02 |
| lnc-MON2-2:8 | 12 | −1.58 | 3.34E-02 |
| lnc-MON2-2:10 | 12 | −1.60 | 3.08E-02 |
| lnc-MON2-2:2 | 12 | −1.60 | 3.08E-02 |
| lnc-KNG1-2:6 | 3 | −1.61 | 3.90E-02 |
| lnc-COPG2-3:1 | 7 | −1.62 | 4.77E-02 |
| SNHG16:42 | 17 | −1.74 | 3.16E-02 |
| lnc-TPTE-3:4 | 21 | −1.86 | 8.02E-03 |
| lnc-CTR9-1:2 | 11 | −2.06 | 9.05E-03 |
| lnc-FLOT2-1:1 | 17 | −2.07 | 3.17E-02 |
| lnc-SNURF-1:73 | 15 | −2.14 | 2.67E-02 |
| lnc-C9orf100-1:1 | 9 | −2.15 | 4.22E-03 |
| lnc-IRS4-2:1 | X | −2.22 | 4.25E-03 |
| lnc-SNURF-1:17 | 15 | −2.50 | 8.46E-03 |
| lnc-HIATL1-20:1 | 9 | −2.55 | 7.27E-03 |
| lnc-SNAPC5-4:3 | 15 | −2.57 | 5.11E-03 |
| lnc-TRIM52-2:1 | 5 | −2.61 | 3.17E-03 |
| lnc-RPL13A-1:5 | 19 | −2.65 | 3.05E-03 |
| lnc-AC106017.1.1-2:2 | 17 | −2.70 | 5.11E-03 |
| LINC00273:1 | 16 | −2.71 | 1.04E-03 |
| LINC00273:11 | 16 | −2.77 | 3.02E-03 |
| lnc-GRAP-1:2 | 17 | −2.83 | 3.64E-02 |
| lnc-TRIM59-2:1 | 3 | −2.96 | 1.45E-03 |
| MIR210HG:7 | 11 | −2.96 | 7.50E-03 |
| SNHG21:29 | 15 | −3.01 | 2.42E-02 |
| lnc-GCNT1-4:1 | 9 | −3.04 | 3.40E-03 |
| lnc-PLA2G1B-2:3 | 12 | −3.13 | 3.40E-03 |
| FTX:29 | X | −3.18 | 8.08E-03 |
| lnc-HEPH-1:1 | X | −3.29 | 2.27E-02 |
| lnc-HES7-1:1 | 17 | −3.29 | 1.61E-02 |
| lnc-TTLL10-3:9 | 1 | −3.42 | 3.14E-02 |
| lnc-CCNB1IP1-1:4 | 14 | −3.42 | 4.32E-02 |
| lnc-ERAL1-1:1 | 17 | −3.43 | 1.65E-02 |
| LINC-PINT:28 | 7 | −3.46 | 7.20E-03 |
| lnc-COL4A5-3:1 | X | −3.46 | 6.64E-04 |
| LINC-PINT:29 | 7 | −3.48 | 4.72E-03 |
| lnc-KIF20B-3:1 | 10 | −3.54 | 2.92E-03 |
| lnc-FGA-1:1 | 4 | −3.57 | 2.25E-04 |
| SNHG1:44 | 11 | −3.57 | 1.08E-03 |
| SNHG1:4 | 11 | −3.57 | 1.08E-03 |
| SNHG19:3 | 16 | −3.63 | 5.35E-04 |
| lnc-RP4-695O20__B.10.1-3:10 | 22 | −3.75 | 2.66E-03 |
| lnc-GPR39-10:3 | 2 | −3.75 | 1.98E-04 |
| lnc-RP4-695O20__B.10.1-3:9 | 22 | −3.75 | 2.66E-03 |
| lnc-RP4-695O20__B.10.1-3:12 | 22 | −3.75 | 2.66E-03 |
| SNHG22:3 | 18 | −3.82 | 2.20E-04 |
| UBA6-AS1:26 | 4 | −3.90 | 4.16E-04 |
| SNHG5:47 | 6 | −3.92 | 6.02E-04 |
| SNHG5:5 | 6 | −3.92 | 6.02E-04 |
| lnc-CTD-2144E22.5.1-19:1 | 16 | −3.93 | 2.31E-02 |
| lnc-VMP1-3:3 | 17 | −4.24 | 2.10E-03 |
| DNM3OS:3 | 1 | −4.27 | 2.92E-03 |
| LINC00472:10 | 6 | −4.33 | 2.57E-03 |
| lnc-SLC15A4-24:1 | 12 | −4.41 | 9.30E-06 |
| lnc-AL669831.1-12:2 | 1 | −4.46 | 2.20E-04 |
| lnc-C11orf54-1:1 | 11 | −4.50 | 1.65E-02 |
| lnc-AC007952.1.1-3:2 | 17 | −4.62 | 8.97E-03 |
| GAS5:68 | 1 | −4.64 | 5.35E-04 |
| lnc-CUL1-5:1 | 7 | −4.68 | 6.37E-04 |
| lnc-AL669831.1-14:1 | 1 | −4.78 | 2.26E-02 |
| lnc-TSPY10-14:1 | Y | −4.78 | 4.41E-05 |
| lnc-KLK1-2:3 | 19 | −4.90 | 2.25E-04 |
| lnc-KIF2C-2:1 | 1 | −5.12 | 2.17E-04 |
| lnc-C19orf57-6:5 | 19 | −5.31 | 1.09E-03 |
| lnc-PDIA4-1:1 | 7 | −5.34 | 4.07E-04 |
| lnc-GPR39-7:1 | 2 | −5.46 | 2.64E-05 |
| lnc-LRR1-1:1 | 14 | −5.49 | 1.21E-04 |
| MIR503HG:16 | X | −5.53 | 1.18E-02 |
| lnc-LRR1-1:4 | 14 | −5.54 | 1.10E-04 |
| lnc-HIST1H2AH-5:1 | 6 | −5.57 | 5.50E-03 |
| lnc-SLC25A30-3:1 | 13 | −5.59 | 1.55E-02 |
| lnc-GPR39-10:2 | 2 | −5.61 | 6.27E-06 |
| MIR503HG:17 | X | −5.62 | 1.01E-02 |
| lnc-FGG-2:1 | 4 | −5.63 | 5.83E-05 |
| lnc-NEMF-1:4 | 14 | −5.67 | 1.17E-04 |
| lnc-AC007952.2.1-2:2 | 17 | −5.92 | 7.20E-03 |
| MIR193BHG:18 | 16 | −6.01 | 1.27E-02 |
| lnc-AFP-1:2 | 4 | −6.14 | 1.85E-05 |
| lnc-AFP-3:1 | 4 | −6.17 | 8.71E-06 |
| lnc-ANKRD34B-4:2 | 5 | −6.22 | 1.51E-04 |
| lnc-AUTS2-6:1 | 7 | −6.55 | 1.28E-06 |
| lnc-KNG1-2:8 | 3 | −6.65 | 2.69E-04 |
| MIR99AHG:51 | 21 | −6.83 | 1.98E-04 |
| MIR99AHG:50 | 21 | −6.83 | 1.98E-04 |
| MIR99AHG:63 | 21 | −6.83 | 1.98E-04 |
| MIR99AHG:42 | 21 | −6.84 | 1.98E-04 |
| lnc-DUOX1-2:1 | 15 | −6.94 | 2.92E-03 |
| lnc-DUOXA1-2:1 | 15 | −6.97 | 2.92E-03 |
| lnc-DUOXA1-1:1 | 15 | −7.02 | 2.71E-03 |
| lnc-ZBTB37-2:1 | 1 | −7.11 | 4.82E-04 |
| GAS5:16 | 1 | −7.16 | 7.55E-03 |
| lnc-SYT10-3:5 | 12 | −7.18 | 1.04E-05 |
| LINC01138:11 | 1 | −7.26 | 5.98E-06 |
| lnc-RABGGTB-1:6 | 1 | −7.59 | 5.68E-05 |
| lnc-HNRNPA2B1-10:4 | 7 | −7.75 | 1.47E-04 |
| lnc-AC006156.1-11:1 | Y | −7.76 | 9.35E-06 |
| lnc-DAO-3:1 | 12 | −7.76 | 1.85E-05 |
| lnc-CFH-2:1 | 1 | −7.78 | 1.66E-06 |
| lnc-VSTM5-1:13 | 11 | −8.06 | 1.98E-04 |
| lnc-SNURF-1:2 | 15 | −8.07 | 3.64E-03 |
| lnc-AUTS2-6:2 | 7 | −8.45 | 9.30E-06 |
| lnc-NEK8-2:1 | 17 | −8.52 | 4.33E-05 |
| SNHG1:25 | 11 | −8.66 | 4.22E-03 |
| LRRC75A-AS1:49 | 17 | −8.93 | 1.04E-04 |
| MIR17HG:6 | 13 | −9.59 | 9.21E-05 |
| lnc-SPG7-2:3 | 16 | −9.70 | 2.94E-05 |
| ZFAS1:23 | 20 | −9.84 | 4.68E-05 |
| lnc-AK3-1:1 | 9 | −9.89 | 2.69E-04 |
| lnc-TPTE-3:5 | 21 | −9.93 | 2.64E-02 |
| SNHG1:12 | 11 | −10.01 | 3.40E-03 |
| lnc-ZNF169-7:2 | 9 | −10.29 | 2.64E-04 |
| lnc-APAF1-3:1 | 12 | −10.43 | 5.36E-03 |
| lnc-SNAPC5-4:1 | 15 | −10.61 | 1.26E-05 |
| lnc-SNAPC5-4:2 | 15 | −10.74 | 9.76E-03 |
| lnc-SLC3A2-6:1 | 11 | −11.22 | 7.37E-05 |
| lnc-SNURF-1:92 | 15 | −12.62 | 2.89E-05 |
| lnc-SNURF-1:95 | 15 | −12.62 | 2.96E-05 |
| SNHG1:1 | 11 | −13.61 | 6.63E-06 |
| lnc-AFP-2:1 | 4 | −14.05 | 6.73E-07 |
| SNHG1:59 | 11 | −14.65 | 3.37E-03 |
| lnc-ZNF169-7:7 | 9 | −15.03 | 1.52E-03 |
| lnc-VSTM5-1:10 | 11 | −16.65 | 1.75E-03 |
| lnc-MOS-1:2 | 8 | −17.57 | 2.77E-06 |
| lnc-HAUS5-3:2 | 19 | −18.31 | 2.94E-07 |
| lnc-HAUS5-3:1 | 19 | −18.35 | 2.94E-07 |
| lnc-MINA-3:5 | 3 | −19.52 | 1.41E-03 |
| SNHG8:14 | 4 | −19.53 | 1.11E-03 |
| lnc-RPL17-2:4 | 18 | −21.13 | 3.79E-05 |
| lnc-MYO16-7:1 | 13 | −21.97 | 3.76E-07 |
| lnc-CRKL-2:1 | 22 | −22.43 | 4.38E-07 |
| lnc-VSTM5-1:7 | 11 | −23.84 | 5.36E-04 |
| LINC00910:16 | 17 | −25.81 | 6.63E-06 |
| LINC00910:1 | 17 | −26.20 | 5.76E-06 |
| lnc-ARHGEF6-4:1 | X | −28.71 | 4.77E-08 |
| MIR17HG:5 | 13 | −28.92 | 1.14E-03 |
| LRRC75A-AS1:41 | 17 | −29.36 | 9.83E-05 |
| lnc-CCNB1IP1-1:2 | 14 | −31.52 | 1.91E-05 |
| lnc-TPTE-3:9 | 21 | −33.36 | 7.98E-04 |
| LRRC75A-AS1:36 | 17 | −34.20 | 2.52E-06 |
| lnc-TMEM132C-11:1 | 12 | −34.56 | 1.45E-05 |
| lnc-CTD-2144E22.5.1-20:1 | 16 | −35.71 | 1.21E-03 |
| GAS5:43 | 1 | −41.26 | 2.89E-05 |
| lnc-NEDD4L-1:6 | 18 | −41.69 | 1.28E-06 |
| lnc-HSD17B10-3:1 | X | −230.89 | 1.85E-05 |
| lnc-AC022098.1-1:10 | 19 | −343.09 | 2.34E-07 |