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. 2018 May 22;19:379. doi: 10.1186/s12864-018-4771-1

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — PCA on the pan-matrix. Each dot marks a genome in the first two principal components of the pan-matrix. Strains are coloured by clade designation and disease-causing capability. Shapes represent; triangle, netB positive from diseased birds; squares, netB negative poultry isolates; circle, non-poultry netB negative isolate