Table 4.
Summary statistics for identified InDels for LG50 tumor tissue, primary cell line and PDX xenografts
| Samples | Total InDels | Fraction of InDels in dbSNP (%) | Fraction of InDels in 1000 genomes (%) | Novel | Homozygous | Heterozygous | Intron | 5′ UTRs | 3′ UTRs | Upstream | Down stream | Intergenic |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Patient tumor tissue | 15,964 | 80.62 | 60.42 | 2728 | 6044 | 9920 | 13,059 | 234 | 664 | 340 | 296 | 339 |
| Primary cell line | 14,176 | 82.15 | 60.77 | 2223 | 5567 | 8609 | 11,616 | 195 | 561 | 264 | 242 | 309 |
| PDX tumor tissue | 14,958 | 78.09 | 57.28 | 2223 | 5379 | 9579 | 12,205 | 214 | 616 | 273 | 259 | 328 |