Table 1.
Raphidocelis subcapitata | Monoraphidium neglectum | Tetradesmus obliquus | Chromochloris zofingiensis ** | Chlamydomonas reinhardtii *** | |
---|---|---|---|---|---|
Strain | NIES-35 | SAG 48.87 | UTEX393 | SAG 211-14 | CC503 |
Reference | This study | Bogen et al. (2013) | Carreres et al. (2017), this study | Roth et al. (2017) | Merchant et al. (2008) |
Assembly size (Mbp) | 51 (≥5 kb) | 68 | 108 | 58 | 111 |
Number of scaffolds | 417 (≥1 kb), 300 (≥5 kb) |
857 (>20 kb) | 1,368 | 19 (chromosomes) | 54 |
L50 (Scaffolds) | 46 | 1,303 | 177 | — | 7 |
N50 (Scaffolds, kbp) | 342 | 16 | 187 | chromosomes | 7,800 |
GC% | 72 | 65 | 57 | 51 | 64 |
Number of CDSs | 13,383 | 16,761 | 12,496 | 15,274 | 17,741 |
Mean protein length (aa) | 561 | 348 | 452 | 427 | 736 |
Mean intron length (bp) | 230 | 302 | 462 | 284 | 270 |
Number of introns per gene | 5.7 | 4.0 | 7.8 | 4.0 | 7.5 |
coding%* | 44.0 | 25.7 | 15.7 | 39**** | 35.2 |
*Only protein-coding genes.
**JGI v. 5.2.3.2.
***JGI v. 5.5.
****Roth et al. (2017).