Table 1.
Genes overexpressed in PEDF−/− vs. PEDF+/+ ChECs
| Position | Gene Symbol | Fold Regulation | Comments | RT2 Catalog |
|---|---|---|---|---|
| H12 | PPC | 21.69 | ||
| F04 | Ltb | 5.44 | PPM03119A | |
| C02 | Cd40 | 5.27 | PPM03426C | |
| D04 | Cxcr4 | 5.16 | PPM03149E | |
| F08 | Nos2 | 3.07 | PPM02928B | |
| E04 | Il1rn | 2.98 | PPM03547B | |
| C07 | Cxcl1 | 2.97 | A | PPM03058C |
| G09 | Tlr9 | 2.74 | PPM04221A | |
| F01 | Itgb2 | 2.72 | PPM03592F | |
| A11 | Ccl20 | 2.61 | PPM03142B | |
| C10 | Cxcl2 | 2.42 | PPM02969F | |
| D08 | Il10 | 2.25 | PPM03017C | |
| H07 | RTC | 2.23 | PPX63340A | |
| A01 | Bcl6 | 2.22 | PPM04965C | |
| H09 | RTC | 2.21 | PPX63340A | |
| B10 | Ccr3 | 2.19 | PPM03173A | |
| A12 | Ccl22 | 2.02 | PPM02950B | |
| H08 | RTC | 2.02 | PPX63340A | |
| B11 | Ccr4 | 2.02 | PPM03147A |
Fold change threshold is 2. Fold change values >1 imply a positive or an increase, and the fold regulation is equal to fold change. Fold change values <1 imply a negative or decrease, and the fold regulation is the negative inverse of the fold change. A: the gene’s average threshold cycle is relatively high (>30) in either the control or test sample, and is reasonably low in other sample (<30). These data mean that the gene expression is relatively low in one sample and reasonably detected in the other sample, suggesting that the actual fold change value is at least as large as the calculated and reported fold change result.