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Time consumption for each steps in the NextSV pipeline for 10X PacBio data set
| SV caller | Aligner | CPU (number of threads) | Alignment time (hour) | SV calling time (hour) | Total Time (hour) |
|---|---|---|---|---|---|
| PBHoney | BLASR | 12 | 79.6 | 0.27 (Tails) 0.96 (Spots) |
80.8 |
| Sniffles | BWA-MEM | 12 | 27.0 | 1.1 | 28.1 |
| Sniffles | NGMLR | 12 | 11.2 | 1.3 | 12.5 |
