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. 2018 May 24;8:8088. doi: 10.1038/s41598-018-26416-2

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Examples of OpGen correction. The chromosomes are laid out horizontally and homologous segments between v3.5.1 and v3.6.1 are shown as colored blocks. Each color block stands for a scaffold or consecutive merged scaffolds. Blocks that are shifted downwards represent re-oriented segments in v3.6.1. Blocks that are swiped/translocated in another position represent re-ordered segments. Gap size correction is shown as white gaps inside the blocks.