Table 5. Permutation lists of the 15 random codes with the lowest MS0 values.

Each column represents one codon set (see Fig. 3). The amino acids of the SGC are replaced by the corresponding amino acid, i.e., the amino acid in the same column, of the variant code.

SGC	Phe	Leu	Ile	Met	Val	Ser	Pro	Thr	Ala	Tyr	His	Gln	Asn	Lys	Asp	Glu	Cys	Trp	Arg	Gly
code 942623	Lys	Gly	Gln	Ile	His	Arg	Pro	Thr	Ala	Asn	Val	Leu	Trp	Cys	Phe	Tyr	Glu	Asp	Met	Ser
code 254612	Phe	Pro	Met	Leu	His	Ala	Ser	Tyr	Gly	Ile	Thr	Arg	Trp	Val	Lys	Asp	Cys	Glu	Gln	Asn
code 634755	Asn	Gly	His	Val	Phe	Ala	Pro	Ser	Trp	Lys	Gln	Cys	Tyr	Ile	Met	Leu	Asp	Glu	Arg	Thr
code 697299	Ser	His	Lys	Glu	Gln	Tyr	Pro	Thr	Val	Ile	Leu	Arg	Asn	Asp	Phe	Gly	Trp	Cys	Ala	Met
code 050521	Gln	Thr	Cys	Leu	Pro	Gly	Ser	Met	Tyr	Lys	Asn	Trp	Phe	Ala	Ile	Val	Asp	Glu	His	Arg
code 584015	Gly	Arg	Glu	Asp	His	Pro	Ala	Ser	Leu	Phe	Val	Trp	Gln	Asn	Tyr	Ile	Met	Lys	Thr	Cys
code 354015	Ile	Phe	Thr	Glu	Ala	Ser	Gly	Arg	His	Cys	Leu	Pro	Val	Met	Trp	Tyr	Lys	Asp	Gln	Asn
code 602874	Ser	Ala	Cys	Leu	Tyr	Gln	Lys	His	Gly	Arg	Met	Val	Trp	Ile	Pro	Phe	Glu	Asp	Thr	Asn
code 607794	Val	Arg	Lys	Asp	Tyr	His	Ser	Gln	Pro	Met	Thr	Asn	Ala	Glu	Phe	Leu	Ile	Cys	Gly	Trp
code 672469	Ser	Thr	Leu	Met	Ile	Gln	Gly	Val	Phe	Asn	His	Arg	Ala	Pro	Cys	Trp	Asp	Glu	Lys	Tyr
code 336066	Trp	Gln	Thr	Pro	Tyr	His	Asn	Ala	Gly	Leu	Ser	Phe	Cys	Ile	Val	Met	Glu	Asp	Lys	Arg
code 660225	Tyr	Ile	Met	Gly	Val	Lys	Ala	His	Arg	Asn	Thr	Cys	Pro	Trp	Leu	Phe	Glu	Asp	Ser	Gln
code 170069	Leu	Ser	Phe	Met	His	Thr	Ala	Trp	Gln	Pro	Gly	Asn	Cys	Ile	Lys	Asp	Tyr	Glu	Val	Arg
code 581048	Val	Pro	Gly	Trp	Leu	Arg	Thr	Ala	Ile	Lys	Ser	Tyr	Gln	Asn	Phe	Met	Glu	Asp	His	Cys
code 227926	Lys	His	Gln	Asn	Gly	Ser	Thr	Tyr	Trp	Asp	Cys	Val	Ala	Leu	Ile	Met	Glu	Arg	Pro	Phe

Notes.

Items in bold are those three codes that still outperformed SGC after applying the transition/transversion weighting (See Fig. 1).