Table 1.

Paraburkholderia species used in this study.

Species	Strains	Accession numbera	Assembly level	#contigsb	Genome size (bp)	GC%	Habitat notec	#PPd	PP genome (Kb)e
P. fungorum	NBRC 102489	NZ_BAYC0100001-NZ_BAYC0100124	Contig	124	8,696,214	61.84	Fungal-associated (N-P)	1	13.2
P. sordidicola	LMG 22029	NZ_FCOC01000001-NZ_FCOC01000072	Contig	72	6,848,654	60.16	Fungal-associated (N-P)	2	47.9
P. terrae	BS001	AKAUA01000000	Contig	330	11,294,072	61.82	Fungal-associated (N-P)	1	36.7
P. terrae	BS007	NFVE00000000	Contig	788	11,025,273	61.89	Fungal-associated (N-P)	1	20.7
P. terrae	BS110	NFVD00000000	Contig	658	11,178,172	61.83	Fungal-associated (N-P)	2	34.5
P. terrae	BS437	NFVC00000000	Contig	843	11,303,071	61.78	Fungal-associated (N-P)	2	76.3
P. terrae	DSM 17804T	CP02611-CP02614	Complete	4	10,062,489	61.92	Fungal-associated (N-P)	1	25
P. terrae	NBRC 100964	NZ_BBJK01000001-NZ_BBJK01000247	Contig	247	9,925,782	61.96	Forest soil (N-P)	1	25
P. hospita	DSM 17164T	CP026105-CP026110	Complete	6	11,527,706	61.79	Soil (N-P)	2	40.7
P. caribensis	DSM 13236T	CP026101-CP026104	Complete	4	9,032,490	62.58	Soil (N-P)	2	89.9
P. caribensis	MWAP64	NZ_CP013102-05	Complete	4	9,032,119	62.58	Vertisol soil (N-P)	2	89.5
Paraburkholderia sp.	MF2-27	NP	Complete	7	9,573,839	61.68	Soil (N-P)	9	419.4
P. ferrariae	NBRC 106233	NZBAYB01000001-NZBAYB01000097	Contig	97	7,938,642	64.82	Iron ore (N-P)	1	21.4
P. ginsengisoli	NBRC 100965	NZ_BBIF01000001-50	Contig	50	6,541,887	63.61	Soil (N-P)	1	33.7
P. glathei	KpR1_Mero_10 m	NZ_CCNS1000001-NZ_CCNS1000138	Contig	138	7,492,386	64.73	Acid lateritic (N-P)	4	111.9
P. oxyphila	NBRC 105797	NZ_BAYD01000001-NZ_CCNS10000313	Contig	313	10,647,665	64.14	Acidic forest soil (N-P)	2	50.1
P. phenoliruptrix	AC1100	NZ_ASXI01000001-NZ_ASXI01000286	Contig	286	7,811,030	63.14	Soil (N-P)	1	33.8
P. xenovorans	LB400	NC_007951-NC_007953	Complete	3	9,731,138	62.63	Soil (N-P)	2	85.4
P. kururiensis	M130	NZ_ANSK01000001-NZ_ANSK01000009	Contig	9	7,128,857	65.02	Aquifer (N-P)	1	27.4
P. zhejiangensis	CEIB S4-3	NZ_JSBM01000001-NZ_JSBM01000154	Contig	154	7,630,666	62.78	Sludge (N-P)	1	14.8
P. andropogonis	ICMP2807	NZ_LAQU01000001-NZ_LAQU01000272	Contig	272	6,065,807	58.99	Sorghum bicolor (P)	1	19.5
P. bannensis	NBRC 03871	NZ_BAYA01000001-NZ_BAYA01000102	Contig	102	8,648,774	63.96	Grass-associated (P)	3	98
P. bryophila	376MFSha3.1	NZ_KB911034-NZ_KB911065	Contig	32	7,381,819	61.86	Moss-associated (P)	0	0
P. caledonica	NBRC 102488	NZ_BAYE01000061-NZ_BAYE01000075	Contig	75	7,282,355	61.97	Plant-assosiated (P)	0	0
P. graminis	C4D1M	NZ_ABLD01000001-NZ_ABLD01000070	Contig	70	7,477,263	62.87	Plant-assosiated (P)	2	50.3
P. grimmiae	R27	NZ_JFHE01000001-NZ_JFHE01000160	Contig	160	6,661,774	63.04	Xerophilous moss (P)	1	33.6
P. heleia	NBRC 101817	NZ_BBJH01000001-NZ_BBJH01000110	Contig	110	8,007,470	64.61	Aquatic plant (P)	1	23.6
P. mimosarum	NBRC 106338	NZ_BBJJ01000001-NZ_BBJJ01000381	Contig	381	8,491,217	63.8	Plant root (P)	4	99.3
P. nodosa	DSM 21604	NZ_JAFA01000001-NZ_JAFA01000133	Scaffold	113	9,627,966	64.07	Root nodules (P)	4	119.3
P. phymatum	STM815	NC_010622, NC_010623, NC_010625, NC_010627	Complete	4	8,676,562	62.29	Root legume nodule (P)	5	138.3
P. phytofirmans	PsJN	NC_010681, NC_010676, NC_010679	Complete	3	8,214,658	62.29	Plant-assosiated (P)	1	63
P. phytofirmans	BS455	NP	Contig	209	8,859,905	62.15	Plant-assosiated (P)	2	64.8
P. phytofirmans	BIFAS53	NP	Contig	222	8,267,758	61.63	Plant-assosiated (P)	1	13.3
P. phytofirmans	J1U5	NP	Contig	689	10,330,795	61.09	Plant-assosiated (P)	2	23.4
P. sacchari	LMG 19450	NZ_JTDB01000001-NZ_JTDB01000112	Contig	112	7,263,741	64.04	Sugarcane (P)	2	27.5
P. sprentiae	WSM 5005	NZ_KI421529-34 NZ_AXBN01000062, NZ_AXBN01000035	Contig	8	7,761,063	63.18	Root legume nodule (P)	1	11.2
B. pseudomallei	K96243	NZ_CP009537-NZ_CP009538	Complete	2	7,247,614	68.06	Human pathogenic (N-P)	4	115.3
B. cenocepacia	J2315	NC_011000-NC_011003	Complete	4	8,055,782	66.9	Soil (P)	4	128.5
B. glumae	PG1	NZ_CP002580, NZ_CP002581	Complete	2	7,896,538	68.77	Plant pathogenic (P)	2	50

^aNP, Not yet published;

^b#, number;

^cThe habitat of the Paraburkholderia were manually checked and thus crossed-checked from the GOLD database version October 2017 (see section Materials and Methods);

^dPP, prophages;

^etotal amount of prophage sequence in genome;

^Ttype strain.