Table 4.

Summary of CRISPR elements found across all Paraburkholderia genomes in this study.

Host	Strain	#CRISPR systems	Total #spacers	# Repeat sequences	Repeat length (bp)	Repeat number	Repeat Sequence	Cas genesa
P. terrae	BS001	2	5	2	23	1	CGCGGATGCCAGCGCAAAGGCAA	NI
					25	2	GCGTAAGCGCTAAAGCGCTAACGCC	NI
P. terrae	BS007	2	5	2	25	3	GGCGTTAGCGCTTTAGTGCTTACGC	NI
					23	4	CATAACGCGGATGCCAGCGCAAA	NI
P. terrae	BS110	2	5	2	23	5	CGCGGATGCCAGCGCAAAGGCAA	NI
					25	6	GCGTAAGCGCTAAAGCGCTAACGCC	NI
P. terrae	DSM 17804T	2	2	2	24	7	GTTTGCGCTGGCATCCGCGATTTG	NI
					23	8	TGCACAAACAACCTCACCTTCCT1	NI
P. terrae	NBRC 100964	2	5	2	24	27	GTTTGCGCTGGCATCCGCGATTTG	NI
					23	28	TGCACAAACAACCTCACCTTCCT	NI
P. graminis	C4D1M	1	2	1	24	9	GAACCCGCAGAACCCGCAGAACCC	NI
P. grimmiae	R27	2	42	2	29	10	GGGTCTATCTCCGCGCACGCGGAGGAACC	cas1, cas2, cas3HR,
					29	11	GGTTCCTCCGCATGCGCGGAGATAGACCC	cas5, cas6e, cas7, cas8e, and cse2gr11
P. heleia	NBRC 101817	1	3	1	24	12	TACCACGGCGGCTACTATCATGGC	NI
P. nodosa	DSM 21604	1	2	1	32	13	TGCTCGTGCTCGTGCTCGTGCTCGTGCTCGTG	NI
P. phymatum	stm815	1	2	1	23	14	GGCGGCAACCGCGAAGGCGGCTA	NI
P. phytofirmans	PsJN	1	3	1	23	15	TTCGTACCCGATCGGGTACGAAA	NI
P. phytofirmans	J1U5	1	7	1	24	16	AGTCCGGTGACCGGCGCGAGCGGA	NI
P. sacchari	LMG 19450	2	8	2	24	17*	GAAAAGTGACGGATTGTGGCCCGC	NI
					24	18*	GAAAAGTGACGGATTGTGGCCCGC	NI
P. sprentiae	WSM5005	1	2	1	24	19	GGCTAAACCGAGCGCCATACTTGC	NI
P. hospita	DSM 17164T	1	3	1	25	20	GGCGTTAGCGCTTTAGTGCTTACGC	NI
P. oxyphila	NBRC 105797	3	36	3	28	21	TGTGTCGACTCGACACAGCACTCAATCG	NI
					28	22	TTTCTAAGCTGCCTACGCGGCAGCGAAC	NI
					24	23	GTCGACCAGAGTTAGCGCTTCAGC	NI
P. phenoliruptrix	AC1100	1	2	1	24	24	TTGTCCACGTGTATCCGCTCAAAT	NI
Paraburkholderia sp.	MF2-27	2	7	2	27	25	GGTCAGCGGTGCCAGCGGGCTGCTGCC	NI
					24	26	TTGTCCACGTGTATCCGCTCAAAT	NI
P. xenovorans	LB400	2	5	2	25	29	CTTCGTACCCGAGCGGGTACGAAAT	NI
					24	30	AAAGGTGAGCGTTTTCGGGAGCGC	NI
P. zhejiangensis	CEIB S4-3	2	18	2	28	31	GGTCTATCTCCGCGCGCGCGGAGGAACC	cas1, cas2, cas3HR,
					25	32	GGTTCCTCCGCGTCCGCGGAGATAG	cas5, cas6e, cas7, cas8e, and cse2gr11

^aNI,not identified;

^*named on the basis of different location in the genome.