Table 1.
Summary statistics of TAD mapping
| Input TADs | Reference assembly | Number of TADs | Mean TAD width (kb) | Number of input TADs mapped (ratio) | |||
|---|---|---|---|---|---|---|---|
| Study | Cell or tissue | 1 location in bovine genome | Same bovine chromosome | Bovine genome | |||
| Dixon 2012 | hESC | hg18 | 3127 | 852.2 | – | – | – |
| bostau6 | 2885 | 830.5 | 2784(89.03%) | 2930(93.70%) | 2956(94.53%) | ||
| IMR90 | hg18 | 2349 | 1122 | – | – | – | |
| bostau6 | 2236 | 1071 | 2050(87.27%) | 2198(93.57%) | 2261(96.25%) | ||
| mESC | mm9 | 2200 | 1093 | – | – | – | |
| bostau6 | 2173 | 1104 | 1912(86.91%) | 2041(92.77%) | 2127(96.68%) | ||
| cortex | mm9 | 1519 | 1542 | – | – | – | |
| bostau6 | 1597 | 1489 | 1283(84.46%) | 1401(92.23%) | 1502(98.88%) | ||
| Rudan 2015 | liver | mm10 | 3643 | 695 | – | – | – |
| bostau6 | 3507 | 602.5 | 2388(65.55%) | 2873(78.86%) | 2901(79.63%) | ||
| canfam3 | 3315 | 686.5 | – | – | – | ||
| bostau6 | 2979 | 810 | 2731(82.38%) | 2887(87.09%) | 2916(87.96%) | ||
The source study and cell/tissue from input TAD dataset, and also the input and output reference assemblies with the number of TADs and their mean width (in kilobases) are shown. Also presented are the number of input TADs that did not split during mapping (1 location in the bovine genome), the number of input TADs that did not split or split intra-chromosomally during mapping (same bovine chromosome), and the number of input TADs that did not split, split intra-chromosomally or inter-chromosomally during mapping (bovine genome)