Table 1.
Characteristics of the reads from 12 duck skin transcriptomes
| Sample | Raw bases (Gb) | Q20 value (%) | GC content (%) | Raw reads | Clean reads | Total mapped reads | Unique mapped readsa |
|---|---|---|---|---|---|---|---|
| EP1 | 4.23 | 97.41 | 52 | 47,016,964 | 45,760,796 | 33,808,649 (73.88%) | 32,354,205 (70.70%) |
| EP2 | 4.25 | 97.47 | 53 | 47,310,314 | 46,088,812 | 33,990,213 (73.75%) | 32,496,607 (70.51%) |
| EF1 | 4.00 | 96.92 | 48 | 44,475,234 | 42,914,954 | 33,946,076 (79.10%) | 32,667,856 (76.12%) |
| EF2 | 4.31 | 96.78 | 51 | 47,959,362 | 45,914,254 | 35,291,893 (76.86%) | 33,725,136 (73.45%) |
| MP1 | 4.30 | 97.59 | 55 | 47,812,176 | 46,738,350 | 33,041,341 (70.69%) | 29,841,803 (63.85%) |
| MP2 | 4.36 | 97.58 | 54 | 48,498,554 | 47,459,658 | 32,965,478 (69.46%) | 28,966,738 (61.03%) |
| MF1 | 4.36 | 97.49 | 52 | 48,448,010 | 47,364,954 | 35,355,911 (74.65%) | 32,808,228 (69.27%) |
| MF2 | 4.28 | 97.68 | 51 | 47,560,598 | 45,252,442 | 34,196,920 (75.57%) | 31,667,123 (69.98%) |
| LP1 | 4.35 | 97.13 | 49 | 48,414,006 | 46,679,934 | 37,128,381 (79.54%) | 35,833,060 (76.76%) |
| LP2 | 4.35 | 97.21 | 48 | 48,369,596 | 46,514,142 | 37,313,860 (80.22%) | 35,996,537 (77.39%) |
| LF1 | 4.34 | 97.16 | 48 | 48,217,072 | 46,385,418 | 37,094,213 (79.97%) | 35,737,770 (77.05%) |
| LF2 | 4.35 | 97.07 | 48 | 48,378,418 | 46,602,248 | 37,258,174 (79.95%) | 35,878,071 (76.99%) |
aUnique mapped reads, reads that matched the reference genome in only one position