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. 2018 Mar 30;19(1):19.1.22. doi: 10.1128/jmbe.v19i1.1477

TABLE 2.

Explanation and examples of conventions of diagrams.

Conventions of Diagrams—Prose Examples in Figure 1
Title
 • Is at the top The title at the top: “Life cycle of Chlamydia
 • Tells key idea of diagram
Caption
 • Is next to the figure number; often located below a figure FIGURE 1. Flow diagram showing the life cycle of Chlamydia.
 • Expands on key idea of diagram (what to notice) Provides description of each panel of figure: A), B)
 • May include abbreviations EB = elementary body of Chlamydia; RB = reticulate body of Chlamydia.
Labels
 • Inside diagram
  -- Naming labels: Name parts of things “Elementary body (EB)”, “Nucleus”
  -- Explanatory labels: Describe what is happening in a part of the diagram Six explanatory labels are present in Figure 1A. The first one is located at 1 o’clock.
  -- Labels of passage of time: List amount of time that has passed between two events The infection starts at 0 hours and progresses (clockwise) with events described at 12 hours, 20 hours, 30 hours, and 48 hours.
Legend
 • Identifies what any symbols used represent

Conventions of Diagrams—Graphic Elements Examples in Figures 1 or 2

Arrows
 • Single shape, color, and size should mean same thing Figure 1: The five blue process arrows show the sequence of events during Chlamydia infection. Note that the length of the arrows does not correlate with the length of elapsed time.
 • Common to have same type of arrow mean related process instead of same process
 -- Process arrows: Indicate a sequence of events
 -- Divergent arrows: Show two processes that occur at same time OR that two possibilities exist but only one occurs
Cycle or circle
 • Start is located at 12 o’clock Figure 1: The life cycle is drawn as a circle.
 • Proceeds clockwise Figure 1. Drawings of an infected cell as it progresses through all the stages of infection.
 • Drawings or illustrations of animals, humans, organs, cells, microbes
Color
 • Color of symbols and graphic elements depicts relationship.
OR
Figure 1B: Change in color of arrows—from light blue at beginning of infection to dark blue at release of infectious EBs—shows direction and correlates with passage of time.
 • Same color: Color of object is same in nature and in diagram
OR
Figure 1. The beige color of the depicted cytoplasm of the infected cells is close to the true color observed under the light microscope
 • After staining and in diagrams. E.g., photographs of stained tissue where certain cells are stained, (e.g., a specific microbe, protein, or RNA using Gram stain, immunohistochemistry, or in situ hybridization, respectively)
OR
 • False color: Color of object is changed to contrast it with background or other related biological part Figure 1: The contents of the cell, the EBs, and RBs use false color to make them easier to see.
Magnification
 • Zoom-in: Like a magnifying glass; shows a magnified part of an object
 • Zoom-out: Like stepping back from a leaf to see a forest; shows the object at lower magnification and as part of a bigger structure. Figure 2.

EB = elementary body; RB = reticulate body.